View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_212 (Length: 250)
Name: NF8294A_low_212
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_212 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 5 - 250
Target Start/End: Original strand, 56069291 - 56069553
Alignment:
| Q |
5 |
gactgaaatgaagcaagccatgtatacaaaaagaataataaattatataatggattgcaa-------------ttgacctttattatggatggatgttgc |
91 |
Q |
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| T |
56069291 |
gactgatacgaagcaagccatgtatacaaaaagaataataaattatataatggattgcaacctataaggtgcattgacctttattatggatggatgttgc |
56069390 |
T |
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| Q |
92 |
attctcgcaaatacacagaatcataatgaacgtacttcgtccaacaaccttgaaacttttgaatacttatctcgatccatggtttcatatttccat---- |
187 |
Q |
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| T |
56069391 |
attctcgcaaatacacagaatcataatgaatgtacttcgtccaataaccttgaaacttttgaatacttatctcgagccatggtttcatatttccattata |
56069490 |
T |
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| Q |
188 |
tatagtgtgtattacagcagccctttcgatatctttttggttgacatcagggttgtagccaag |
250 |
Q |
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| T |
56069491 |
tatagtgtgtattacagcagcactttcgatatctttttggttgacatcagggttgtagccaag |
56069553 |
T |
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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 73 - 250
Target Start/End: Complemental strand, 38398961 - 38398786
Alignment:
| Q |
73 |
tattatggatggatgttgcattctcgcaaatacacagaatcataatgaacgtacttcgtccaacaaccttgaaacttttgaatacttatctcgatccatg |
172 |
Q |
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| T |
38398961 |
tattattgattgatattgcattctcgcaaatactcactctcataatcaacatacttcgtccaataacctttaaacttcggtatacttatctccagccacg |
38398862 |
T |
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| Q |
173 |
gtttcatatttccattatagtgtgtattacagcagccctttcgatatctttttggttgacatcagggttgtagccaag |
250 |
Q |
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| T |
38398861 |
gtttcaagtttccgttata--gtgaattacagcagccctttcaatatctttttggttgacattggggttgtagccaag |
38398786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 250
Target Start/End: Complemental strand, 10171266 - 10171097
Alignment:
| Q |
79 |
ggatggatgttgcattctcgcaaatacacagaatcataatgaacgtacttcgtccaacaaccttgaaacttttgaatacttatctcgatccatggtttca |
178 |
Q |
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|||| ||||||||||||||||||||| ||| || ||| | || ||||| ||||| ||||| |||||| ||||||||||||| | |||||| |||| |
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| T |
10171266 |
ggattgatgttgcattctcgcaaatagacatgattatagttgacatactttgtccagtaacctctaaacttgggaatacttatctccaaccatggcttca |
10171167 |
T |
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| Q |
179 |
tatttccattatagtgtgtattacagcagccctttcgatatctttttggttgacatcagggttgtagccaag |
250 |
Q |
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| T |
10171166 |
tgttcccattgtagtgcata--acagcagcccgatcaatatctttttggttgacgttgggattgtagccaag |
10171097 |
T |
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