View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8294A_low_219 (Length: 249)
Name: NF8294A_low_219
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_219 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 12123760 - 12123989
Alignment:
| Q |
11 |
atataaacgaataagacgttttttctttg-----gtaagttcaaaaggatcaatcaaattggtaaatgaagagcttacnnnnnnnnnncattatctttct |
105 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
12123760 |
atataaacgaataagatgttttttcttttctttagtaagttcaaaaggatcaatcaaattgataaatgaagagcttacttttttttttcattatctttct |
12123859 |
T |
|
| Q |
106 |
nnnnnnnnnntaaactatttgtattctcaacctcttaactaaattttggtagtttaaaataactagtaaaaagaaagacttaagatattattttatggag |
205 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12123860 |
aaaaaaaaat--aactatttctattctcaacctcttacctaaattttggtagtttaaaataactagtaaaacgaaagacttaagatattattttatggag |
12123957 |
T |
|
| Q |
206 |
aggtctccatcctttttcttgtggtgaatatt |
237 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| |
|
|
| T |
12123958 |
aggtctccatcctttttcttgttgagaatatt |
12123989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University