View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_226 (Length: 248)

Name: NF8294A_low_226
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_226
NF8294A_low_226
[»] chr6 (2 HSPs)
chr6 (1-231)||(13609308-13609538)
chr6 (127-195)||(31561110-31561178)
[»] chr4 (8 HSPs)
chr4 (36-197)||(31245292-31245453)
chr4 (70-195)||(31158951-31159076)
chr4 (70-195)||(31489919-31490044)
chr4 (67-202)||(31019495-31019630)
chr4 (67-202)||(31029376-31029511)
chr4 (70-100)||(31477218-31477248)
chr4 (70-100)||(31502340-31502370)
chr4 (41-94)||(31033784-31033837)
[»] chr7 (1 HSPs)
chr7 (1-202)||(14724536-14724734)
[»] chr5 (1 HSPs)
chr5 (1-202)||(17599028-17599233)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 13609308 - 13609538
Alignment:
Q  1 tatggaatcattctatgggatctaatttgattaaaactaggctatgtcaaataaaatcccttgtagttcttgataatgttgataaagttgaacaactgga 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609308 tatggaatcattctatgggatctaatttgattcaaactaggctatgtcaaataaaatcccttgtagttcttgataatgttgataaagttgaacaactgga 13609407  T
Q  101 taaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatttctagagatggccatatcttgagagagcatggagtagatgaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609408 taaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatttctagagatggccatatcttgagagagcatggagtagatgaaatt 13609507  T
Q  201 tatgaagtacgagcattagatcttaatgatg 231  Q
    |||||||||||||||||||||||||||||||    
T  13609508 tatgaagtacgagcattagatcttaatgatg 13609538  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 31561110 - 31561178
Alignment:
Q  127 taggttcagggagtagaattatcgtaatttctagagatggccatatcttgagagagcatggagtagatg 195  Q
    ||||| ||||||||||||||||  | |||||||||||||  ||||| |||| |||| ||||||| ||||    
T  31561110 taggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatg 31561178  T

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Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 36 - 197
Target Start/End: Original strand, 31245292 - 31245453
Alignment:
Q  36 actaggctatgtcaaataaaatcccttgtagttcttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcag 135  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||  || ||||||||||| |||||  |||    
T  31245292 actaggctatgtcaaataaaatcccttatagttcttgataatgttgatcaagttgaacaactggataaattggctatgacacgagaatggctaggcacag 31245391  T
Q  136 ggagtagaattatcgtaatttctagagatggccatatcttgagagagcatggagtagatgaa 197  Q
    |||||||||| ||| |||||||||||||||  ||||||||||||||||||||||||||||||    
T  31245392 ggagtagaatcatcataatttctagagatgttcatatcttgagagagcatggagtagatgaa 31245453  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 195
Target Start/End: Complemental strand, 31159076 - 31158951
Alignment:
Q  70 ttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatttctagagatggcca 169  Q
    |||||||||||||||||||||||||||| |||||| | |   | |  || |||||  ||||| |||||||||||||  |  |||||||||||||||  ||    
T  31159076 ttgataatgttgataaagttgaacaacttgataaattagctgtgaatcgtgaatgcttaggtgcagggagtagaatcgttataatttctagagatgaaca 31158977  T
Q  170 tatcttgagagagcatggagtagatg 195  Q
    |||||||| |||| ||||||| ||||    
T  31158976 tatcttgaaagagtatggagttgatg 31158951  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 195
Target Start/End: Original strand, 31489919 - 31490044
Alignment:
Q  70 ttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatttctagagatggcca 169  Q
    ||||||||||||||||||||| |||||| |||||| |||   | |  || |||||  ||||| ||||||||||||| ||  |||||||| ||||||  ||    
T  31489919 ttgataatgttgataaagttggacaacttgataaattgggtgtgaatcgtgaatggttaggtgcagggagtagaatcattataatttctggagatgaaca 31490018  T
Q  170 tatcttgagagagcatggagtagatg 195  Q
    |||||||| |||| ||||||| ||||    
T  31490019 tatcttgaaagagtatggagttgatg 31490044  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 202
Target Start/End: Complemental strand, 31019630 - 31019495
Alignment:
Q  67 ttcttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatttctagagatgg 166  Q
    |||| ||||||||||||||||||||||| || |||||  | |   |||  || |||||| |||||  |||||||||||| ||  |||||||||||||||     
T  31019630 ttctcgataatgttgataaagttgaacagctcgataagttagctttaaatcgtgaatgtttaggtgtagggagtagaatcattataatttctagagatga 31019531  T
Q  167 ccatatcttgagagagcatggagtagatgaaattta 202  Q
     ||||||||||  ||| ||||||| |||||| ||||    
T  31019530 gcatatcttgaatgagtatggagttgatgaagttta 31019495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 202
Target Start/End: Complemental strand, 31029511 - 31029376
Alignment:
Q  67 ttcttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatttctagagatgg 166  Q
    |||| ||||||||||||||||||||||| || |||||  | |   |||  || |||| | ||||| ||||||||||||| ||  |||||||||||||||     
T  31029511 ttctcgataatgttgataaagttgaacagctcgataagttagctttaaatcgtgaatatttaggtgcagggagtagaatcattataatttctagagatga 31029412  T
Q  167 ccatatcttgagagagcatggagtagatgaaattta 202  Q
     ||||||||||  ||| ||||||| |||||| ||||    
T  31029411 gcatatcttgaatgagtatggagttgatgaagttta 31029376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 100
Target Start/End: Original strand, 31477218 - 31477248
Alignment:
Q  70 ttgataatgttgataaagttgaacaactgga 100  Q
    |||||||||||||||||||||||||||||||    
T  31477218 ttgataatgttgataaagttgaacaactgga 31477248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 100
Target Start/End: Original strand, 31502340 - 31502370
Alignment:
Q  70 ttgataatgttgataaagttgaacaactgga 100  Q
    |||||||||||||||||||||||||||||||    
T  31502340 ttgataatgttgataaagttgaacaactgga 31502370  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 31033837 - 31033784
Alignment:
Q  41 gctatgtcaaataaaatcccttgtagttcttgataatgttgataaagttgaaca 94  Q
    |||| |||| |||| | ||||| |||||||||||||||||||| ||||||||||    
T  31033837 gctaggtcatataagagcccttctagttcttgataatgttgatcaagttgaaca 31033784  T

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Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 14724536 - 14724734
Alignment:
Q  1 tatggaatcattctatgggatctaatttgattaaaactaggctatgtcaaataaaatcccttgtagttcttgataatgttgataaagttgaacaactgga 100  Q
    |||| |||| ||||||||||||||||||||||  ||||| |||||||||||||||||| |||| |||||||||||||||   | ||||||||||||| ||    
T  14724536 tatgcaatctttctatgggatctaatttgattcgaactacgctatgtcaaataaaatctcttgaagttcttgataatgt---tcaagttgaacaacttga 14724632  T
Q  101 taaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatttctagagatggccatatcttgagagagcatggagtagatgaaatt 200  Q
     ||| ||| ||| | | || |||| |||||  |||| |||||||| |||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||    
T  14724633 aaaattggccatgaaatgataatggctaggcacaggaagtagaatcatcgtaatatctagagatagccatatcttcagagagcatggagtagatgaagtt 14724732  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 17599233 - 17599028
Alignment:
Q  1 tatggaatcattctatgggatctaatttgattaaaactaggctatgtcaaataaaatcccttgtagttcttgataatgttgataaagttgaacaactgga 100  Q
    |||| |||| ||||||||||||||||||||||  ||||| |||||||||||||||||| |||   ||||||||||||||| || ||||||||||||||||    
T  17599233 tatgcaatctttctatgggatctaatttgattcgaactacgctatgtcaaataaaatctcttactgttcttgataatgttcatcaagttgaacaactgga 17599134  T
Q  101 taaactggacataacacgagaa----tgtctaggttcagggagtagaattatcgtaatttctagagatggccatatcttgagagagcatggagtagatga 196  Q
     ||| ||| ||| | | |||||    || |||||  || | |||||||| |||||||| ||||||||| |||||||||| ||||||||||||||||||||    
T  17599133 aaaattggccatgaaatgagaatggctggctaggcacaagaagtagaatcatcgtaatatctagagatagccatatcttcagagagcatggagtagatga 17599034  T
Q  197 aattta 202  Q
    | ||||    
T  17599033 agttta 17599028  T

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