View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_248 (Length: 244)
Name: NF8294A_low_248
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_248 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 25633599 - 25633365
Alignment:
| Q |
1 |
attaattatatacagaagattttattagatgataaagaaaaagaagtcggtaacatta-ttgttaatcattacttgcagtctaagcaactagatctaaga |
99 |
Q |
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| T |
25633599 |
attaattatatccagaatatattattagatgataaagataaagaagtcggtaacattagttgttaatcattacttgcagcctaagcaactagatctaaga |
25633500 |
T |
|
| Q |
100 |
gtgcttagctacactatagcatatgatagcttaattaatgtacacaaacatatgtctatatatacttgctgtaacagat--acttcattaatgagaataa |
197 |
Q |
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|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
25633499 |
gtacttagctacactatagtatatgatagcttaattaatgtacacaaacatatgtctatatatacttgctgtaacagatacacttcatcaatgagaataa |
25633400 |
T |
|
| Q |
198 |
tacttttccatacatttttctggtttcctaatatt |
232 |
Q |
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||||| ||||| ||||||||||||||||||||||| |
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| T |
25633399 |
tacttctccattcatttttctggtttcctaatatt |
25633365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 28669586 - 28669485
Alignment:
| Q |
68 |
attacttgcagtctaagcaactagatctaagagtgcttagctacactatagcatatgatagcttaattaatgtacacaaacata-tgtctatatatactt |
166 |
Q |
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|||||||||||||||||||||||| || ||||| |||||||||||||| || ||||||||||||| ||| |||| ||| ||||||||||||||| |
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| T |
28669586 |
attacttgcagtctaagcaactag-tcgcagagtaattagctacactataacacatgatagcttaat----gtagacaagcattctgtctatatatactt |
28669492 |
T |
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| Q |
167 |
gctgtaa |
173 |
Q |
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| T |
28669491 |
gctgtaa |
28669485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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