View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_252 (Length: 243)
Name: NF8294A_low_252
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_252 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 20816530 - 20816289
Alignment:
| Q |
1 |
tgcttagccaatcaagggtcaacaacatagactataccatcgatggtcaatgaagttcctgctatgtttgttgataccaaaatcttccttccaggaaggc |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816530 |
tgcttagccaatccagggtcaacaacatagactataccattgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggc |
20816431 |
T |
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| Q |
101 |
ctccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816430 |
ctccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgt |
20816331 |
T |
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| Q |
201 |
gtccccccgaattgaaacttcattggatattcttcgacatgc |
242 |
Q |
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|||||||||||||| |||||||||||||||| | |||||||| |
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| T |
20816330 |
gtccccccgaattgcaacttcattggatattttgcgacatgc |
20816289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 38779615 - 38779821
Alignment:
| Q |
1 |
tgcttagccaatcaagggtcaacaacatagactataccatcgatggtcaatgaagttcctgctatgtttgttgataccaaaatcttccttccaggaaggc |
100 |
Q |
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|||||||| |||| ||| |||| |||||||||||||||||| || ||||| |||||| ||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
38779615 |
tgcttagcaaatccaggatcaataacatagactataccatcaattgtcaaggaagtttctgctatgtttgttgataccacaatcttccttccaggggggc |
38779714 |
T |
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| Q |
101 |
ctccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgt |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| || || || ||||||||||||||||| |
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| T |
38779715 |
ctccctccttaactggaggtggagctggctcaaaaatcttctgttgcatagctgggggaagagtagaatataatggcacggctttcacagggcccacctg |
38779814 |
T |
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| Q |
201 |
gtccccc |
207 |
Q |
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||||||| |
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| T |
38779815 |
gtccccc |
38779821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 33388574 - 33388771
Alignment:
| Q |
1 |
tgcttagccaatcaagggtcaacaacatagactataccatcgatggtcaatgaagttcctgctatgtttgttgataccaaaatcttccttccaggaaggc |
100 |
Q |
| |
|
||||| || |||| |||||||| |||||| ||||||||||| || ||||| |||||| ||||||||||||||||||||| |||||| |||||||| |||| |
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| T |
33388574 |
tgcttggcaaatccagggtcaataacatatactataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttcttccagggaggc |
33388673 |
T |
|
| Q |
101 |
ctccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccacc |
198 |
Q |
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||||||| |||||||||| |||||||||||||||||| | || |||||||| |||||||| |||||||||| | || |||||||||||||||||| |
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| T |
33388674 |
ctccctccttaactggaggcggagctggctcaaaaatcttctgctgcatagctgggggaagggtagaatacagtgataacactttcacagggcccacc |
33388771 |
T |
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