View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_254 (Length: 243)

Name: NF8294A_low_254
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_254
NF8294A_low_254
[»] chr1 (14 HSPs)
chr1 (91-230)||(13244112-13244251)
chr1 (1-86)||(13244450-13244535)
chr1 (1-92)||(13080788-13080879)
chr1 (91-160)||(12963575-12963644)
chr1 (5-94)||(19279089-19279178)
chr1 (98-165)||(19278827-19278894)
chr1 (5-93)||(12963797-12963885)
chr1 (28-87)||(13094604-13094663)
chr1 (28-87)||(13130033-13130092)
chr1 (38-87)||(13161736-13161785)
chr1 (5-89)||(13086289-13086373)
chr1 (28-87)||(13101205-13101264)
chr1 (156-230)||(19278735-19278809)
chr1 (5-86)||(13271768-13271849)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 13244251 - 13244112
Alignment:
Q  91 tttccctctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttcatttcctttgtactcagttatacatttgtc 190  Q
    |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  13244251 tttccccctttcccaatctttccttcattagttcttttagcaggcaataacgagattcatctacatcttcatttcctttgtaatcagttatacatttctc 13244152  T
Q  191 caagaagtggtgaagattttcttttgctgccttgcccttc 230  Q
    |||||| ||||||||||||||| | |||||||||||||||    
T  13244151 caagaattggtgaagattttctctagctgccttgcccttc 13244112  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 13244535 - 13244450
Alignment:
Q  1 gatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaa 86  Q
    |||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13244535 gatagcgcacttgtgctgaaatgccagaggaggatatagcctcaaggtttcacatatggctccatgaaggtaaacaagcttatcaa 13244450  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 13080879 - 13080788
Alignment:
Q  1 gatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaagctctt 92  Q
    |||||||||||||||||||||||| | || |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  13080879 gatagcacacttgtgctgaaatgctacagaaggatatagccttaaggcttcacatatggctccatgaaggtaaactagcttatcaagctctt 13080788  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 12963644 - 12963575
Alignment:
Q  91 tttccctctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttc 160  Q
    |||||| ||||||||||||||| |||||||| ||||||||||||||| || |||||||||| || |||||    
T  12963644 tttccccctttcccaatccttccttcattagatcttttagcaggcaagaatgagattcatccacgtcttc 12963575  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 19279178 - 19279089
Alignment:
Q  5 gcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaagctctttc 94  Q
    ||||||||||| | |||||  | ||| ||| | |||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  19279178 gcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcacatatagctccatgaagataaactagcttatcaagctctttc 19279089  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 19278894 - 19278827
Alignment:
Q  98 ctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttcatttc 165  Q
    ||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||  | ||||||||||    
T  19278894 ctttcccaatctttccttcattagttcttttaccaggcaataatgagattcatccgcgtcttcatttc 19278827  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 12963885 - 12963797
Alignment:
Q  5 gcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaagctcttt 93  Q
    ||||||||||| | |||||  | ||||||| | |||||||| | |||||| || ||||||||||| |||||||||||||||||| ||||    
T  12963885 gcacacttgtgttcaaatggtataggaggataaagccttaaagcttcacaaatagctccatgaagataaacaagcttatcaagcccttt 12963797  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 13094604 - 13094663
Alignment:
Q  28 aggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaag 87  Q
    ||||||| | |||||||||||||||||||| |||||||| ||||| || |||||||||||    
T  13094604 aggaggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaag 13094663  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 13130033 - 13130092
Alignment:
Q  28 aggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaag 87  Q
    ||||||| | |||||||||||||||||||| |||||||| ||||| || |||||||||||    
T  13130033 aggaggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaag 13130092  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 13161736 - 13161785
Alignment:
Q  38 agccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaag 87  Q
    |||||||||||||||||||| |||||||| ||||| || |||||||||||    
T  13161736 agccttaaggtttcacatatagctccatggaggtatactagcttatcaag 13161785  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 13086289 - 13086373
Alignment:
Q  5 gcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaagct 89  Q
    |||||||||||||||||||  | ||||||| | ||||| || | ||||||||| |||||||||||||| || || |||| |||||    
T  13086289 gcacacttgtgctgaaatggtacaggaggataaagcctcaatgcttcacatatagctccatgaaggtacactagtttattaagct 13086373  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 13101205 - 13101264
Alignment:
Q  28 aggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaag 87  Q
    ||||||| | ||||| |||||||||||||| |||||||| ||||| || |||||||||||    
T  13101205 aggaggataaagcctcaaggtttcacatatagctccatggaggtacactagcttatcaag 13101264  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 19278809 - 19278735
Alignment:
Q  156 tcttcatttcctttgtactcagttatacatttgtccaagaagtggtgaagattttcttttgctgccttgcccttc 230  Q
    |||||||  |||||||| | || ||||||||||| |||||| | ||||||||||||||| ||| || ||||||||    
T  19278809 tcttcatcacctttgtaataagatatacatttgttcaagaattcgtgaagattttctttagctaccgtgcccttc 19278735  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 13271768 - 13271849
Alignment:
Q  5 gcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaa 86  Q
    ||||||||||| | |||||  | ||||||| | || || |||||||||||||| ||| ||||||||||||  ||||||||||    
T  13271768 gcacacttgtgatcaaatggtataggaggataaagtctcaaggtttcacatatagctgcatgaaggtaaatcagcttatcaa 13271849  T

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