View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_26 (Length: 428)
Name: NF8294A_low_26
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 7 - 407
Target Start/End: Original strand, 40322192 - 40322594
Alignment:
| Q |
7 |
attaattgataggatatagttgcagttgaattggattggaactctcagcattctgcttgctctccgtcttcaagtcagttaaaattccattcacttannn |
106 |
Q |
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| T |
40322192 |
attaattgataggatatagttgcagttgaattggattggaaatctcagcattctgcttgctctccgtcttcaagtgagttaaaattccattcacttattt |
40322291 |
T |
|
| Q |
107 |
nnnnnncatatgttttttaaattcgcacatttagcatgtnnnnnnnnnnnnnnnt------tcctcactacagttgaaagagatagtttaccggtcaaaa |
200 |
Q |
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| T |
40322292 |
ttttttcatatgttttttaaattcgcatatttagcatgtaaaagtaaaaaaaaaaaaaaaatcctcactacagttgaaagagatagtttacctgtcaaaa |
40322391 |
T |
|
| Q |
201 |
ttgaattcaattaaaacccattaatggtttccataactccattaatggtttctataatttcatttgatttagataacaaacgaactgggggatcaaattg |
300 |
Q |
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| T |
40322392 |
ttgaattcaattaaaacccat----ggtttccataactccattaatggtttctataatttcatttgattgagataacaaacgaactaggggatcaaattg |
40322487 |
T |
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| Q |
301 |
aaaaaccatgatcaatacttttctgatttttcaagcgaaaagataaattgaaacaaaacttgtagcaccgtannnnnnngttatggggtattaagtatta |
400 |
Q |
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| T |
40322488 |
aaaaaccatgattaatacttttctgatttttcaagcgaaaagataaattgaaacaaaacttgtagcaccatatttttttgttatggggtattaagtatta |
40322587 |
T |
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| Q |
401 |
actagca |
407 |
Q |
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| T |
40322588 |
actagca |
40322594 |
T |
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