View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_261 (Length: 241)
Name: NF8294A_low_261
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_261 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 341205 - 341424
Alignment:
| Q |
1 |
gagaaggcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341205 |
gagaaggcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagaga |
341304 |
T |
|
| Q |
101 |
agaaaatgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaat |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341305 |
agaaaatgactgaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaat |
341404 |
T |
|
| Q |
201 |
caatgctgaaagtgatgatg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
341405 |
caatgctgaaagtgatgatg |
341424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 332913 - 333132
Alignment:
| Q |
1 |
gagaaggcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagaga |
100 |
Q |
| |
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|||||||||||||||||||| ||||| | ||||||||||||||||| |||||| ||||||||| |||| |||||| ||||||||||| || ||||||| |
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| T |
332913 |
gagaaggcttttaaccaagctgaagaatgcatcttctatagacacatcgtgcccgtttgtgtttagaagatgcaaaaatggcttcaaattggggaagaga |
333012 |
T |
|
| Q |
101 |
agaaaatgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaat |
200 |
Q |
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| T |
333013 |
aaaaaatgaccgaggcatgcaaagtatttgataaattcctattttcgtgtatagcttcaaagcgcgaagagctaaagcaaaattgtaacaaaaatgaaat |
333112 |
T |
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| Q |
201 |
caatgctgaaagtgatgatg |
220 |
Q |
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||||| ||||||||| |||| |
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| T |
333113 |
caatgttgaaagtgacgatg |
333132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 337167 - 337386
Alignment:
| Q |
1 |
gagaaggcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagaga |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
337167 |
gagaaggcttttaaccaagctgaagaatccatcttctacagacacactgtgccggcttgtgtttggaagttgcaaagttggcttcaaatcggtgaagaga |
337266 |
T |
|
| Q |
101 |
agaaaatgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaat |
200 |
Q |
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| |||||||| || |||||||| ||||||||||||||||| | ||||||||| |||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
337267 |
aaaaaatgactgaagcatgcaaagtatttgatcaattcctatattcgtgtatagcttcaaaatgcgaagagctaaagaaaaacggtaacaaaaatgaaat |
337366 |
T |
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| Q |
201 |
caatgctgaaagtgatgatg |
220 |
Q |
| |
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|||| | ||||| |||||| |
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| T |
337367 |
taatggtcaaagtaatgatg |
337386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 347548 - 347412
Alignment:
| Q |
1 |
gagaaggcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagaga |
100 |
Q |
| |
|
||||| |||||||||||| ||||||| ||| ||||||||||| | ||||| | |||||||||||||||||| ||||||||||| || ||||||| |
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| T |
347548 |
gagaaagcttttaaccaaattgaagagtgcatattctatagacatatagtgcctaaaagtgtttggaagttgcaaaaatggcttcaaattggtgaagaga |
347449 |
T |
|
| Q |
101 |
agaaaatgacagaggcatgcaaggtatttgatcaatt |
137 |
Q |
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| |||||||| | |||||||| |||||||||||||| |
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| T |
347448 |
aaaaaatgaccaaagcatgcaaagtatttgatcaatt |
347412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 356207 - 356086
Alignment:
| Q |
1 |
gagaaggcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagaga |
100 |
Q |
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||||||||||| |||||| |||||| ||| ||||||||||| | ||||| | |||||||||||||||||| ||||||||||| || ||||||| |
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| T |
356207 |
gagaaggctttcaaccaaatcgaagagggcatattctatagacataaagtgcctaaaagtgtttggaagttgcaaaaatggcttcaaattggtgaagaga |
356108 |
T |
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| Q |
101 |
agaaaatgacagaggcatgcaa |
122 |
Q |
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| || ||||| |||||||||| |
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| T |
356107 |
aaaatatgaccaaggcatgcaa |
356086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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