View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8294A_low_265 (Length: 241)
Name: NF8294A_low_265
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_265 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 37321619 - 37321847
Alignment:
| Q |
7 |
gagaagaaagagagagctgatattacaatcaaagaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagtgggg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37321619 |
gagaagaaagagagagctgatattacaatcaaagaaatgggtctgcaagatgcaatgaacacaagaattggagggtggggtgtgaaaggcataagtgggg |
37321718 |
T |
|
| Q |
107 |
gtcaaaaaaggagagttagcatttgcattgagatcctaacacgtccaagacttctttttcttgatgaaccaactagtggacttgctagtgctgcttctta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
37321719 |
gtcaaaaaaggagagttagcatttgcattgagatcctaacacgtcctagacttctatttcttgatgagccaactagtggacttgatagtgctgcttctta |
37321818 |
T |
|
| Q |
207 |
ctatgttatgaaaagaattgctactttgg |
235 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37321819 |
ctatgttatgaaaagaattgctactttgg |
37321847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 37330541 - 37330762
Alignment:
| Q |
7 |
gagaagaaagagagagctgatattacaatcaaagaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagtgggg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37330541 |
gagaagaaagagagagctgatattacaatcaaagaaatgggtctgcaagatgcaatgaacacaagaattggagggtggggtgtgaaaggcataagtgggg |
37330640 |
T |
|
| Q |
107 |
gtcaaaaaaggagagttagcatttgcattgagatcctaacacgtccaagacttctttttcttgatgaaccaactagtggacttgctagtgctgcttctta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
37330641 |
gtcaaaaaaggagagttagcatttgcattgagatcctaacacgtcctagacttctttttcttgatgagccaactagtggacttgatagtgctgcttctta |
37330740 |
T |
|
| Q |
207 |
ctatgttatgaaaagaattgct |
228 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
37330741 |
ctatgttatgaaaagaattgct |
37330762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 37347064 - 37346847
Alignment:
| Q |
7 |
gagaagaaagagagagctgatattacaatcaaagaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagtgggg |
106 |
Q |
| |
|
||||| ||||| ||||||||| ||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
37347064 |
gagaaaaaagaaagagctgattttacaataagagaaatgggtctgcaagatgcaatcaacacaagaataggagggtggggtgttaaaggaataagtgggg |
37346965 |
T |
|
| Q |
107 |
gtcaaaaaaggagagttagcatttgcattgagatcctaacacgtccaagacttctttttcttgatgaaccaactagtggacttgctagtgctgcttctta |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37346964 |
gtcaaaaaaggagagttagcatttccattgagattcttacacgtccaagacttctatttcttgatgaaccaactagtggacttgatagtgctgcttctta |
37346865 |
T |
|
| Q |
207 |
ctatgttatgaaaagaat |
224 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37346864 |
ctatgttatgaaaagaat |
37346847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 19544899 - 19544671
Alignment:
| Q |
7 |
gagaagaaagagagagctgatattacaatcaaagaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagtgggg |
106 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||||||| | ||||||| ||||||||| |||||||| |||||||||||||| | |
|
|
| T |
19544899 |
gagaagaaagagagagctgattttacaatcagagaaatgggtctgcaagatgctactaacacaataattggaggatggggtgttaaaggcataagtggag |
19544800 |
T |
|
| Q |
107 |
gtcaaaaaaggagagttagcatttgcattgagatcctaacacgtccaagacttctttttcttgatgaaccaactagtggacttgctagtgctgcttctta |
206 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
19544799 |
gtcagaaaaggagagttagcatttgcattgagatccttacacgtccaaaacttctttttcttgatgaaccaacaagtggacttgatagtgctgcttctta |
19544700 |
T |
|
| Q |
207 |
ctatgttatgaaaagaattgctactttgg |
235 |
Q |
| |
|
||||||||||| |||||||||||| |||| |
|
|
| T |
19544699 |
ctatgttatgacaagaattgctaccttgg |
19544671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 217
Target Start/End: Original strand, 37298256 - 37298434
Alignment:
| Q |
39 |
agaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaaaaaggagagttagcatttgcattgag |
138 |
Q |
| |
|
||||||||| ||||| ||||| || |||||||| ||||||||| ||| |||||| |||| ||||| |||| ||||||| | ||||||||||||||| |
|
|
| T |
37298256 |
agaaatgggcctgcaggatgctattaacacaagggttggagggtatggttccaaaggcctaagcggggggcaaagaaggagactaagcatttgcattgag |
37298355 |
T |
|
| Q |
139 |
atcctaacacgtccaagacttctttttcttgatgaaccaactagtggacttgctagtgctgcttcttactatgttatga |
217 |
Q |
| |
|
|| ||||| | || ||||||||||| ||||||||||||||||||||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
37298356 |
attctaactcaccctagacttcttttccttgatgaaccaactagtggacttgatagtgcagcttcctactatgttatga |
37298434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 37291163 - 37291316
Alignment:
| Q |
64 |
aacacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaaaaaggagagttagcatttgcattgagatcctaacacgtccaagacttcttt |
163 |
Q |
| |
|
|||||||| ||||||| |||||| ||||| ||||||| || |||| || ||| ||||||||||||| ||||| ||||| || || |||||||| | |
|
|
| T |
37291163 |
aacacaagggttggaggatggggttctaaaggtctaagtggaggacaaaggagaagacttagcatttgcatcgagattctaacgcgcccgagacttctct |
37291262 |
T |
|
| Q |
164 |
ttcttgatgaaccaactagtggacttgctagtgctgcttcttactatgttatga |
217 |
Q |
| |
|
| ||||||||||| ||||| ||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
37291263 |
tccttgatgaaccgactagcggacttgatagtgcagcttcctactatgttatga |
37291316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University