View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_275 (Length: 238)

Name: NF8294A_low_275
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_275
NF8294A_low_275
[»] chr1 (16 HSPs)
chr1 (1-232)||(13244697-13244928)
chr1 (2-129)||(13271474-13271601)
chr1 (2-213)||(13085911-13086122)
chr1 (2-130)||(12964052-12964180)
chr1 (2-138)||(30368285-30368421)
chr1 (2-206)||(13100812-13101015)
chr1 (2-138)||(13070353-13070489)
chr1 (1-213)||(13081041-13081253)
chr1 (2-138)||(13094278-13094414)
chr1 (2-208)||(13007009-13007215)
chr1 (2-208)||(13204268-13204474)
chr1 (5-130)||(19279348-19279473)
chr1 (2-138)||(13129707-13129843)
chr1 (2-138)||(13161400-13161536)
chr1 (1-212)||(13065389-13065600)
chr1 (70-129)||(13010661-13010720)
[»] chr6 (1 HSPs)
chr6 (7-98)||(31380253-31380344)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 13244697 - 13244928
Alignment:
Q  1 gtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  13244697 gtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttatgg 13244796  T
Q  101 aagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||||||||||    
T  13244797 aagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcatgaaacacggcttaaaggtcgaagtcagtaaaagat 13244896  T
Q  201 gcatttgatataacaaagttgcaagtgtgatg 232  Q
    ||||||||||||||||||||| ||||||||||    
T  13244897 gcatttgatataacaaagttgtaagtgtgatg 13244928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 13271601 - 13271474
Alignment:
Q  2 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 101  Q
    ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| | |||||||    
T  13271601 tcttacaagttcatagcattcaatgcaggtcctagaagctgtcttgggaaagatattagctttattcaaatgaaaatggttgcagcttctgtattatgga 13271502  T
Q  102 agtttcgcatacaggtggtggaaggtca 129  Q
    |||||| |||||| ||||||||||||||    
T  13271501 agtttcacatacatgtggtggaaggtca 13271474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 13086122 - 13085911
Alignment:
Q  2 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 101  Q
    |||| |||||||||||| || |||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| || |||||||||    
T  13086122 tcttgcaagttcatagcatttaatgcaggtcctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatgttatgga 13086023  T
Q  102 agtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatg 201  Q
    |||||| |||||| || |||||||||||  ||||||| |  |||  ||||||||  || |||||| |||| || || || ||| || | |||||||||||    
T  13086022 agtttcacatacaagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtaaaagatg 13085923  T
Q  202 catttgatataa 213  Q
     |||||||||||    
T  13085922 aatttgatataa 13085911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 130
Target Start/End: Original strand, 12964052 - 12964180
Alignment:
Q  2 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 101  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  | |||| ||||    
T  12964052 tcttataagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtgga 12964151  T
Q  102 agtttcgcatacaggtggtggaaggtcac 130  Q
    |||||| |||| | |||||||||||||||    
T  12964152 agtttcacatagaagtggtggaaggtcac 12964180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 30368285 - 30368421
Alignment:
Q  2 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 101  Q
    |||||||||||||||||||||||| |||| |||||||||||||| || |||||| |||| || ||||||||||| |||||||||||| | ||||||||||    
T  30368285 tcttacaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagtttcgttcaaatgaagatggttgcagctgccttgttatgga 30368384  T
Q  102 agtttcgcatacaggtggtggaaggtcaccctgtaac 138  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  30368385 agtttcacatacaggtcgtggaaggtcaccctgtaac 30368421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 13101015 - 13100812
Alignment:
Q  2 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 101  Q
    |||||||||||||||||||||||| |||| |||||||||||||| || || |||||||||||  |||||||||| ||||| |||||| ||||||||  ||    
T  13101015 tcttacaagttcatagctttcaat-caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccga 13100917  T
Q  102 agtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatg 201  Q
    |||||| ||||||||||||||||||||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||| || ||| |||||||||    
T  13100916 agtttcacatacaggtggtggaaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatg 13100817  T
Q  202 cattt 206  Q
    |||||    
T  13100816 cattt 13100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 13070353 - 13070489
Alignment:
Q  2 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 101  Q
    |||||||||||||||||||||||| ||||||| ||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  ||    
T  13070353 tcttacaagttcatagctttcaatacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacaga 13070452  T
Q  102 agtttcgcatacaggtggtggaaggtcaccctgtaac 138  Q
    |||||| ||||||||||||||||||||||||||||||    
T  13070453 agtttcacatacaggtggtggaaggtcaccctgtaac 13070489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 13081041 - 13081253
Alignment:
Q  1 gtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgg 100  Q
    |||||| ||||||||||| || ||||||||||| ||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||| |  | ||||      
T  13081041 gtcttataagttcatagcgtttaatgcaggtccaagaagctgtcttgggaaagatattagttttcttcaaatgaaaatggttgcagctgcagttttattt 13081140  T
Q  101 aagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagat 200  Q
    ||||||| ||| |||||||||||||||||| |  |||  |  ||   |||||||  |||||||||| |||| ||||| |||||| ||||  |||||||||    
T  13081141 aagtttcacattcaggtggtggaaggtcactcaataattcctagggtttctattctccttcgcatggaacatggctttaaggtcaaaattcgtaaaagat 13081240  T
Q  201 gcatttgatataa 213  Q
    |||||||||||||    
T  13081241 gcatttgatataa 13081253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 13094414 - 13094278
Alignment:
Q  2 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 101  Q
    |||||||||||||||||||||||  |||| || |||| |||||| || ||||||||||| ||  |||||||||| ||||| |||||| |||||||| |||    
T  13094414 tcttacaagttcatagctttcaacacaggacccagaatttgtataggtaaagatattagtttcattcaaatgaagatggtcgcagctgctttgttacgga 13094315  T
Q  102 agtttcgcatacaggtggtggaaggtcaccctgtaac 138  Q
    |||||| ||||||||||||||||||||||||||||||    
T  13094314 agtttcacatacaggtggtggaaggtcaccctgtaac 13094278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 13007215 - 13007009
Alignment:
Q  2 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||| || || |||||||||||  |||||||||| ||||| |||||  ||||||||   |    
T  13007215 tcttacaagttcatagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagcagctttgttaccaa 13007116  T
Q  102 agtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatg 201  Q
    |||||| |||| ||||||||| |||||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||  || ||| |||||||||    
T  13007115 agtttcacataaaggtggtggcaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggttaaagtcactaaaagatg 13007016  T
Q  202 catttga 208  Q
    |||||||    
T  13007015 catttga 13007009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 13204474 - 13204268
Alignment:
Q  2 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 101  Q
    |||||||||||||||||||||||| ||||||||||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  ||    
T  13204474 tcttacaagttcatagctttcaatacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacaga 13204375  T
Q  102 agtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatg 201  Q
    | |||| |||| || | |||||||||||||||||||| |  |  | |||| |||  |||| ||||||| | || ||||||||  || ||| |||||||||    
T  13204374 attttcacataaagatagtggaaggtcaccctgtaaccccaaagatttcttttgttcttcacatgaaatatggtttaaaggttaaagtcactaaaagatg 13204275  T
Q  202 catttga 208  Q
    |||||||    
T  13204274 catttga 13204268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 19279348 - 19279473
Alignment:
Q  5 tacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagt 104  Q
    |||||||||||||| || ||||||||||| ||||| ||| | || ||||||||||  ||  ||||||||||||||||||||||| || | ||||||||||    
T  19279348 tacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcagctgctgtattatggaagt 19279447  T
Q  105 ttcgcatacaggtggtggaaggtcac 130  Q
    ||||||||||||| ||||||||||||    
T  19279448 ttcgcatacaggtcgtggaaggtcac 19279473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 13129843 - 13129707
Alignment:
Q  2 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 101  Q
    |||||||||||| ||||||||||  |||| || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  ||    
T  13129843 tcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacaga 13129744  T
Q  102 agtttcgcatacaggtggtggaaggtcaccctgtaac 138  Q
    |||||| ||||||||||||||||||||||||||||||    
T  13129743 agtttcacatacaggtggtggaaggtcaccctgtaac 13129707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 13161536 - 13161400
Alignment:
Q  2 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 101  Q
    ||||||||||||||| |||||||  |||| || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| |||||||| |||    
T  13161536 tcttacaagttcatatctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacgga 13161437  T
Q  102 agtttcgcatacaggtggtggaaggtcaccctgtaac 138  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  13161436 agtttcacatacaggtggtggaaggtcaccttgtaac 13161400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 13065389 - 13065600
Alignment:
Q  1 gtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgg 100  Q
    |||||||||||||||||||||||||||||| || ||||||||| | || |||||||| | ||| ||| ||||||| |||| ||| ||  || |  |||||    
T  13065389 gtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccgcggctatactatgg 13065488  T
Q  101 aagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagat 200  Q
    |||||| |||||||  | ||||| ||||| |||||||| |  ||   ||||||| ||||  | |||||||| ||||| ||||||  | ||| ||||||||    
T  13065489 aagttttgcatacatttagtggatggtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcatagtcactaaaagat 13065588  T
Q  201 gcatttgatata 212  Q
    ||||||||||||    
T  13065589 gcatttgatata 13065600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 13010720 - 13010661
Alignment:
Q  70 aatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtca 129  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||| ||||||||||||||    
T  13010720 aatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtca 13010661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 31380253 - 31380344
Alignment:
Q  7 caagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttat 98  Q
    |||||||||| |||||||| |||| ||  ||||||||||||| |||||| |||| ||  ||||||| || |||  ||| |||||||||||||    
T  31380253 caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatgtctgcggcttctttgttat 31380344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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