View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_277 (Length: 237)
Name: NF8294A_low_277
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_277 |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 43066712 - 43066784
Alignment:
| Q |
121 |
tatataccaagaatatctcatatacgtgatgacttgatttaatacgtagataaaagtgcatgaatacttcctt |
193 |
Q |
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| T |
43066712 |
tatatacgaagaatatctcatatacgtgatgacttgatttaatacgtagataaaagtgcatgaatacttcctt |
43066784 |
T |
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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 43066429 - 43066482
Alignment:
| Q |
71 |
gtttattaaaatgtacaactaaaaataaacaggattctcaacactttatttata |
124 |
Q |
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| T |
43066429 |
gtttattaaaatgcacaactaaaaataaacaggattctcaacactttatttata |
43066482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 43065855 - 43065898
Alignment:
| Q |
1 |
gatcttgcaagagtaaaaaagaaatatactggatcttgcgatta |
44 |
Q |
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| T |
43065855 |
gatcttgcgagagtaaaaaagaaatatactggatcttgcgatta |
43065898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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