View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_278 (Length: 237)
Name: NF8294A_low_278
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_278 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 38483881 - 38483684
Alignment:
| Q |
14 |
atcattccaaccaacaataatcgccacttgaagaagcaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttca |
113 |
Q |
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| T |
38483881 |
atcattccaaccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttca |
38483782 |
T |
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| Q |
114 |
acaaaacctgtcttcccaacacgatttccatcgaaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctcttactccagaaata |
211 |
Q |
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| T |
38483781 |
acaaaacccgtcttcccaacacgatttccatcgaaaaaactactcccaatatcaataggccatttcaatttctcaaaacacctcttactccaaaaata |
38483684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 30118257 - 30118163
Alignment:
| Q |
40 |
cttgaagaagcaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacctgtcttcccaaca |
134 |
Q |
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| T |
30118257 |
cttgaagaaacaacaccaacataatccaaagcctgtcaaaactccgaaacagattccaaaacgatctctgctcaacaaatccggtcttaccaaca |
30118163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 30118138 - 30118074
Alignment:
| Q |
147 |
aaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctcttactccagaaata |
211 |
Q |
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|||||| ||||||| | |||| ||||||||||| ||||||||||||||| ||||||| ||||| |
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| T |
30118138 |
aaaaaattactcccaacatcaggaggccatttcatcttctcaaaacacctcctactccaaaaata |
30118074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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