View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_279 (Length: 237)
Name: NF8294A_low_279
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_279 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 24122465 - 24122234
Alignment:
| Q |
6 |
gaaccatagacatctcatttatctcagttattcattttaagaggtgaatttctaaccaccagactatttgaccaaaaaatgaaattgtgtaaaaactaca |
105 |
Q |
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| T |
24122465 |
gaaccatagacatctcacttatctcagttattcattttaagaggtgaatttctaaccaccagactatttgaccaaaaaatgaaattgtgtaaaaactaca |
24122366 |
T |
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| Q |
106 |
cccaaagaaagcatccattttacaagttaataatgatgtattcctaatttgcttatctcaggttaatctgtgatttctatcctatggctgctggaaattt |
205 |
Q |
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| T |
24122365 |
cccaaagaaagcatccattttacaagttaataatgatgtattcctaatttgcttatctcaggttaatctgtgatttctatcctatggctgctggaaattt |
24122266 |
T |
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| Q |
206 |
aagtgaatcagttgaacaaggtgacgaagtta |
237 |
Q |
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| T |
24122265 |
aagtgaatcagttgaacaaggtgacgaagtta |
24122234 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 1861430 - 1861486
Alignment:
| Q |
28 |
ctcagttattcattttaagaggtgaatttctaaccaccagactatttgaccaaaaaa |
84 |
Q |
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| T |
1861430 |
ctcacttattcattttaagaggtgaatttttagccacaagactacttgacaaaaaaa |
1861486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 29484932 - 29484975
Alignment:
| Q |
33 |
ttattcattttaagaggtgaatttctaaccaccagactatttga |
76 |
Q |
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| T |
29484932 |
ttattcattttaagaggtgaatatctagccactagactatttga |
29484975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 24284261 - 24284213
Alignment:
| Q |
33 |
ttattcattttaagaggtgaatttctaaccaccagactatttgaccaaa |
81 |
Q |
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|||||||||||||||||||||| |||| |||| || |||||||| |||| |
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| T |
24284261 |
ttattcattttaagaggtgaatgtctagccactaggctatttgaacaaa |
24284213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 2233170 - 2233224
Alignment:
| Q |
33 |
ttattcattttaagaggtgaatttctaaccaccagactatttgaccaaaaaatga |
87 |
Q |
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|||||||||||||||| ||||||| |||||| | | |||||||||||||||||| |
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| T |
2233170 |
ttattcattttaagagttgaatttttaaccaataaattatttgaccaaaaaatga |
2233224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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