View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_28 (Length: 427)

Name: NF8294A_low_28
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_28
NF8294A_low_28
[»] chr6 (4 HSPs)
chr6 (6-421)||(34216660-34217083)
chr6 (221-276)||(31437549-31437604)
chr6 (134-168)||(14385448-14385482)
chr6 (194-274)||(33312448-33312528)
[»] chr7 (2 HSPs)
chr7 (174-346)||(11482726-11482906)
chr7 (40-121)||(11482902-11482983)
[»] chr3 (2 HSPs)
chr3 (40-269)||(21093356-21093584)
chr3 (41-92)||(14679836-14679887)
[»] chr4 (2 HSPs)
chr4 (66-169)||(19551447-19551550)
chr4 (133-168)||(3009039-3009074)
[»] scaffold0061 (1 HSPs)
scaffold0061 (40-92)||(38085-38137)
[»] scaffold0017 (1 HSPs)
scaffold0017 (40-92)||(160642-160694)
[»] chr2 (2 HSPs)
chr2 (40-92)||(20380961-20381013)
chr2 (40-90)||(25976639-25976689)
[»] scaffold0567 (1 HSPs)
scaffold0567 (133-168)||(839-874)
[»] scaffold0490 (1 HSPs)
scaffold0490 (41-92)||(12090-12141)
[»] scaffold0125 (1 HSPs)
scaffold0125 (41-92)||(31435-31486)
[»] chr8 (2 HSPs)
chr8 (134-168)||(17271738-17271772)
chr8 (133-169)||(45270546-45270582)
[»] chr5 (1 HSPs)
chr5 (215-275)||(13644669-13644729)


Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 6 - 421
Target Start/End: Original strand, 34216660 - 34217083
Alignment:
Q  6 gtagcagagagtgtctgttcttgcaacagagatatatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacagatccagataga 105  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34216660 gtagaagagagtgtctgttcttgcaacagagacatatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacggatccagataga 34216759  T
Q  106 agcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaaggagatctggcttcaaatcaatgggaccagctgaccaaatt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  34216760 agcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaaggagatctggcttcaaatcaatggtaccagccgaccaaatt 34216859  T
Q  206 ttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttccatttgttca--------catacttttccaagct 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||        ||||||||||||||||    
T  34216860 ttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccatgccaagcggtaccattttccatttattcacagtcttccatacttttccaagct 34216959  T
Q  298 tagtaaccaaatcatgctccatttatggcttgtcgcccttattcaaggttagccgtccccagagagcattttgacattccgccaatcctttcgagtattc 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  34216960 tagtaaccaaatcatgctccatttatggcttgtcgcccttattcaaggtcagacgtccccagagagcattttgacattccgccaatcctttcgagtattc 34217059  T
Q  398 tccctgaccaattctgatacaaag 421  Q
    | ||||||||||||||||||||||    
T  34217060 tacctgaccaattctgatacaaag 34217083  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 31437549 - 31437604
Alignment:
Q  221 gccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttccattt 276  Q
    |||||||||||||||||||| ||||| ||||| |||||||  ||||||||||||||    
T  31437549 gccgactcaaaatgaaaatcataatatccccttccaagcgacaccattttccattt 31437604  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 14385448 - 14385482
Alignment:
Q  134 ttaaaatccttcgtccattgggagagacgaaggag 168  Q
    |||||||||||||||||||||||||| ||||||||    
T  14385448 ttaaaatccttcgtccattgggagaggcgaaggag 14385482  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 33312528 - 33312448
Alignment:
Q  194 gctgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttccat 274  Q
    |||| ||| ||||| | ||| ||||| ||||| ||||||||||| || ||||| ||| ||||||| || ||||||||||||    
T  33312528 gctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttccat 33312448  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 174 - 346
Target Start/End: Complemental strand, 11482906 - 11482726
Alignment:
Q  174 gcttcaaatcaatgggaccagctgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttcca 273  Q
    |||||||||||| |  ||||| ||||||| ||||| |||||||||||||||||| || ||||||||||||||||||||| | |||  |||||||||||||    
T  11482906 gcttcaaatcaacgataccagttgaccaattttttcgtaagtcctctgccgactaaatatgaaaatcgtaatagccccttcaaagtagtaccattttcca 11482807  T
Q  274 tttgttca--------catacttttccaagcttagtaaccaaatcatgctccatttatggcttgtcgcccttattcaaggt 346  Q
    ||| ||||        ||||||||||| |||||||||||| |||  ||  | || |||||||||| ||||||||| |||||    
T  11482806 tttattcatagtcttccatacttttccgagcttagtaaccgaattctgagctatgtatggcttgttgcccttatttaaggt 11482726  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 11482983 - 11482902
Alignment:
Q  40 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttc 121  Q
    ||||||||||  ||||||||||| |||||||||||||||||| ||||||| || | | ||||||||||| ||||||||||||    
T  11482983 tatttccttcggtgtttgttcccaccaatattcttgcggtaattcaaccatacgggttcagatagaagcatgagtctgcttc 11482902  T

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Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 40 - 269
Target Start/End: Complemental strand, 21093584 - 21093356
Alignment:
Q  40 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaa 139  Q
    |||||||||||| ||  ||||| || |||||||||| ||||| || ||||| | |||||| || ||||| |||||||| ||||||||||| | |  |||     
T  21093584 tatttccttcaaagtacgttcctgctaatattcttgtggtaattcgaccaagcggatccaaatggaagcatgagtctggttctgtgaataatgagaaaag 21093485  T
Q  140 tccttcgtccattgggagagacgaaggagatctggcttcaaatcaatgggaccagctgaccaaattttttgtaagtcctctgccgactcaaaatgaaaat 239  Q
    || ||   ||||||||||| |||||||||| ||||| | ||||  || | || ||| |||||||| ||  |||||||||| |||||||||||||| || |    
T  21093484 tcttttagccattgggagaaacgaaggagacctggccttaaattgatagtactagccgaccaaatattccgtaagtcctcggccgactcaaaatg-aagt 21093386  T
Q  240 cgtaatagcccctgccaagcggtaccattt 269  Q
    | ||||| ||||| |||||||| |||||||    
T  21093385 cataataaccccttccaagcggcaccattt 21093356  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 14679836 - 14679887
Alignment:
Q  41 atttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 92  Q
    ||||||||||||||  ||||||||||||| ||||||||||| ||||||||||    
T  14679836 atttccttcaatgtacgttcccgccaatactcttgcggtaactcaaccaaac 14679887  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 66 - 169
Target Start/End: Complemental strand, 19551550 - 19551447
Alignment:
Q  66 aatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaag 165  Q
    |||||||||| || || |||||||| |  ||||| || ||||||||||| ||||||| |||||| | |||||| ||||||||| |||| |||||||||||    
T  19551550 aatattcttggggcaattcaaccaagcgaatccaaatggaagcgtgagtttgcttctatgaataatgattaaagtccttcgtctattgtgagagacgaag 19551451  T
Q  166 gaga 169  Q
    ||||    
T  19551450 gaga 19551447  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 3009039 - 3009074
Alignment:
Q  133 attaaaatccttcgtccattgggagagacgaaggag 168  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3009039 attaaaatccttcgtccattgggagaggcgaaggag 3009074  T

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Target: scaffold0061 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 38137 - 38085
Alignment:
Q  40 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 92  Q
    |||||||||||||||| | ||||||||||| ||||||||||| || |||||||    
T  38137 tatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac 38085  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 160642 - 160694
Alignment:
Q  40 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 92  Q
    |||||||||||||||| | ||||||||||| ||||||||||| || |||||||    
T  160642 tatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac 160694  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 20381013 - 20380961
Alignment:
Q  40 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 92  Q
    |||||||||||||||| | ||||||||||| ||||||||||| || |||||||    
T  20381013 tatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac 20380961  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 25976639 - 25976689
Alignment:
Q  40 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaa 90  Q
    |||||||||||| ||| ||||||||||||| ||||||||||| || |||||    
T  25976639 tatttccttcaaggttcgttcccgccaatactcttgcggtaactccaccaa 25976689  T

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Target: scaffold0567 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 168
Target Start/End: Complemental strand, 874 - 839
Alignment:
Q  133 attaaaatccttcgtccattgggagagacgaaggag 168  Q
    ||||||||||||||||||||||||||| ||||||||    
T  874 attaaaatccttcgtccattgggagaggcgaaggag 839  T

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Target: scaffold0490 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 12141 - 12090
Alignment:
Q  41 atttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 92  Q
    ||||||||||||||  | ||||||||||| ||||||||||| ||||||||||    
T  12141 atttccttcaatgtacgctcccgccaatactcttgcggtaactcaaccaaac 12090  T

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Target: scaffold0125 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 31435 - 31486
Alignment:
Q  41 atttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 92  Q
    ||||||||||||||   |||||||||||| ||||||||||| ||||||||||    
T  31435 atttccttcaatgtacattcccgccaatactcttgcggtaactcaaccaaac 31486  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 168
Target Start/End: Complemental strand, 17271772 - 17271738
Alignment:
Q  134 ttaaaatccttcgtccattgggagagacgaaggag 168  Q
    |||||||||||||||||||||||||| ||||||||    
T  17271772 ttaaaatccttcgtccattgggagaggcgaaggag 17271738  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 45270546 - 45270582
Alignment:
Q  133 attaaaatccttcgtccattgggagagacgaaggaga 169  Q
    ||||||||||||||||||||| || ||||||||||||    
T  45270546 attaaaatccttcgtccattgagaaagacgaaggaga 45270582  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 13644669 - 13644729
Alignment:
Q  215 tcctctgccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttccatt 275  Q
    ||||| ||||| ||||||||||| || ||||| ||| ||||||| || |||||||||||||    
T  13644669 tcctccgccgagtcaaaatgaaagtcataataccccttgccaagaggcaccattttccatt 13644729  T

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