View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8294A_low_283 (Length: 237)
Name: NF8294A_low_283
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_283 |
 | |
|
| [»] scaffold0128 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 6306691 - 6306842
Alignment:
| Q |
12 |
aagaacacatgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaatt |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
6306691 |
aagaacacatgacataattaataagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgccgtcggtgaaagaaggatttgaatt |
6306790 |
T |
|
| Q |
112 |
agctacggactcttcaggtcgagaagtgatactgaatgagtttgcttcggtt |
163 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6306791 |
agcgacggattcttcaggtcgagaagtgatactgaatgagtttgcttcggtt |
6306842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 20625 - 20773
Alignment:
| Q |
12 |
aagaacacatgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaatt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |
|
|
| T |
20625 |
aagaacacatgacataattaacaagaagctaaatccaagcgaaaggatcgatgtgaatatctttggtggcgatgctgtcggtgaaagaaggatttgaatt |
20724 |
T |
|
| Q |
112 |
agctacggactcttcaggtcgagaagtgatactgaatgagtttgcttcg |
160 |
Q |
| |
|
||| ||||| ||||| ||| |||||||||||| |||||||||||||||| |
|
|
| T |
20725 |
agcgacggattcttcgggtggagaagtgataccgaatgagtttgcttcg |
20773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 39538896 - 39539039
Alignment:
| Q |
16 |
acacatgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattagct |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
39538896 |
acacatgacgtaattaacaagaagctaaacccaggtgaaaggatcgatgtgaatatctttggtggcaacgccgtcggtgaaagaaggatttgaattagcg |
39538995 |
T |
|
| Q |
116 |
acggactcttcaggtcgagaagtgatactgaatgagtttgcttc |
159 |
Q |
| |
|
||||| ||||| ||| |||||||||||| ||||||||||||||| |
|
|
| T |
39538996 |
acggattcttcgggtggagaagtgataccgaatgagtttgcttc |
39539039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 20208941 - 20208903
Alignment:
| Q |
9 |
gaaaagaacacatgacataattaacaagaagctaaacca |
47 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
20208941 |
gaaaagaacacatgatataattaataagaagctaaacca |
20208903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 25 - 160
Target Start/End: Original strand, 33809090 - 33809225
Alignment:
| Q |
25 |
ataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattagctacggactct |
124 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||| | || |
|
|
| T |
33809090 |
ataattaacaagaagctaaacccaggtcaaaggatcgatgtgaatatcttttgtggcgacgccgtcggtgaaagaaggatttgaattagcgacgcattca |
33809189 |
T |
|
| Q |
125 |
tcaggtcgagaagtgatactgaatgagtttgcttcg |
160 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||| |
|
|
| T |
33809190 |
tcgggtcgagaagtgataccgaatgagtttgcttcg |
33809225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 44257490 - 44257456
Alignment:
| Q |
12 |
aagaacacatgacataattaacaagaagctaaacc |
46 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44257490 |
aagaacacatgacataattaataagaagctaaacc |
44257456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University