View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_284 (Length: 236)

Name: NF8294A_low_284
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_284
NF8294A_low_284
[»] chr4 (1 HSPs)
chr4 (19-209)||(11120358-11120545)
[»] chr5 (10 HSPs)
chr5 (34-125)||(42118998-42119089)
chr5 (23-125)||(42130813-42130912)
chr5 (19-125)||(34230718-34230821)
chr5 (19-125)||(34238773-34238876)
chr5 (19-125)||(42125584-42125687)
chr5 (19-125)||(41711702-41711805)
chr5 (19-94)||(41569960-41570035)
chr5 (180-209)||(34230649-34230678)
chr5 (180-209)||(34238704-34238733)
chr5 (180-217)||(42119138-42119175)
[»] chr3 (1 HSPs)
chr3 (19-125)||(8525039-8525142)
[»] chr2 (1 HSPs)
chr2 (23-125)||(12250409-12250508)
[»] chr6 (1 HSPs)
chr6 (19-125)||(25520938-25521041)


Alignment Details
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 11120358 - 11120545
Alignment:
Q  19 cttgaaggccttcacagccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccatgccatgatgagcagcaatcagtcccattttt 118  Q
    ||||||| |||||||||||||| ||||| ||||||||| |||||||||  ||||| ||| ||||||||| ||||||   |||||||||||||||||||||    
T  11120358 cttgaagaccttcacagccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtgacaccattccatga---gcagcaatcagtcccattttt 11120454  T
Q  119 ccatgtttgtgttgaaggttcattaccggcgcaagaaccaaaagatgcagaagataacagcgtgaaggaggacttgaactgaagcaaagca 209  Q
    |||||||  |||||||||||||||||||| |||| || ||||||| | ||||||||| | |||||||||||||| ||||||||||||||||    
T  11120455 ccatgttgttgttgaaggttcattaccggtgcaataatcaaaagaggtagaagataataacgtgaaggaggactcgaactgaagcaaagca 11120545  T

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Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 42118998 - 42119089
Alignment:
Q  34 agccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccatgccatgatgagcagcaatcagtcccatttttccatgtt 125  Q
    ||||||||||||| ||||||||||||||||||||| || |||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  42118998 agccaaggttgagaccaatcacgtgaccagagactctgacacacgcgacaccatgccatgatgagcagcaatcagtcccatttttccatgtt 42119089  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 125
Target Start/End: Original strand, 42130813 - 42130912
Alignment:
Q  23 aaggccttcacagccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccatgccatgatgagcagcaatcagtcccatttttccat 122  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||| |||| ||   |||||||||||||||||||||||||||||    
T  42130813 aaggccttcacagccaaggttgaggtcaatcacgtgaccagagactgtgtcacacgtgacgccattcc---atgagcagcaatcagtcccatttttccat 42130909  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 34230821 - 34230718
Alignment:
Q  19 cttgaaggccttcacagccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccatgccatgatgagcagcaatcagtcccattttt 118  Q
    |||||| |||||||||||||||||| || ||||| ||||||||||| || ||||||||| ||||||||||||   |||||||||||||||||||||||||    
T  34230821 cttgaaagccttcacagccaaggttaaggccaatgacgtgaccagatacggtgtcacacgtgacaccatgcc---atgagcagcaatcagtcccattttt 34230725  T
Q  119 ccatgtt 125  Q
    |||||||    
T  34230724 ccatgtt 34230718  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 34238876 - 34238773
Alignment:
Q  19 cttgaaggccttcacagccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccatgccatgatgagcagcaatcagtcccattttt 118  Q
    |||||| ||||||||| |||||||| || ||||| ||||||||||| || ||||||||| ||||||||||||   |||||||||||||||||||||||||    
T  34238876 cttgaaagccttcacaaccaaggttaaggccaatgacgtgaccagatacggtgtcacacgtgacaccatgcc---atgagcagcaatcagtcccattttt 34238780  T
Q  119 ccatgtt 125  Q
    |||||||    
T  34238779 ccatgtt 34238773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 42125584 - 42125687
Alignment:
Q  19 cttgaaggccttcacagccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccatgccatgatgagcagcaatcagtcccattttt 118  Q
    |||||||||||||||||||||| ||||| ||||||||||||| || ||  || |||||| ||||||||| ||   |||||||||||||||||||||||||    
T  42125584 cttgaaggccttcacagccaagattgaggccaatcacgtgacgagtgatggtatcacacgtgacaccattcc---atgagcagcaatcagtcccattttt 42125680  T
Q  119 ccatgtt 125  Q
    |||||||    
T  42125681 ccatgtt 42125687  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 41711805 - 41711702
Alignment:
Q  19 cttgaaggccttcacagccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccatgccatgatgagcagcaatcagtcccattttt 118  Q
    |||||||||| ||||||||||||||||| |||| |||| ||||| |||| ||||||||  |||||||  |||   ||||||| ||||||||| |||||||    
T  41711805 cttgaaggccatcacagccaaggttgaggccaaccacgcgaccatagacggtgtcacatgtgacaccgggcc---atgagcaacaatcagtctcattttt 41711709  T
Q  119 ccatgtt 125  Q
    |||||||    
T  41711708 ccatgtt 41711702  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 41570035 - 41569960
Alignment:
Q  19 cttgaaggccttcacagccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccatgccatga 94  Q
    ||||||||| |||||||||||||| ||| ||||||||| |||||||||| | ||| ||| ||||||||||||||||    
T  41570035 cttgaaggcattcacagccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtgacaccatgccatga 41569960  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 209
Target Start/End: Complemental strand, 34230678 - 34230649
Alignment:
Q  180 gtgaaggaggacttgaactgaagcaaagca 209  Q
    ||||||||||||||||||||||||||||||    
T  34230678 gtgaaggaggacttgaactgaagcaaagca 34230649  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 209
Target Start/End: Complemental strand, 34238733 - 34238704
Alignment:
Q  180 gtgaaggaggacttgaactgaagcaaagca 209  Q
    ||||||||||||||||||||||||||||||    
T  34238733 gtgaaggaggacttgaactgaagcaaagca 34238704  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 42119138 - 42119175
Alignment:
Q  180 gtgaaggaggacttgaactgaagcaaagcagaactctc 217  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  42119138 gtgaaggaggacttgaactgaagcagagcagagctctc 42119175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 8525039 - 8525142
Alignment:
Q  19 cttgaaggccttcacagccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccatgccatgatgagcagcaatcagtcccattttt 118  Q
    ||||||| |||||||||||||||||||| |||||||||||||||  ||  ||||||||| ||||||||| ||   |||||||||||||| || |||||||    
T  8525039 cttgaagaccttcacagccaaggttgaggccaatcacgtgaccactgatggtgtcacacgtgacaccatccc---atgagcagcaatcaatctcattttt 8525135  T
Q  119 ccatgtt 125  Q
    |||||||    
T  8525136 ccatgtt 8525142  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 125
Target Start/End: Original strand, 12250409 - 12250508
Alignment:
Q  23 aaggccttcacagccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccatgccatgatgagcagcaatcagtcccatttttccat 122  Q
    ||||||||||  |||||||| ||| |||||||| |||||| ||| |||||||||  ||||||||||||   |||||||||||||||||||||||| ||||    
T  12250409 aaggccttcatcgccaaggtcgaggccaatcacatgaccatagattgtgtcacatgtgacaccatgcc---atgagcagcaatcagtcccattttgccat 12250505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 25521041 - 25520938
Alignment:
Q  19 cttgaaggccttcacagccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccatgccatgatgagcagcaatcagtcccattttt 118  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||| |    ||||| ||  ||||||||||||   ||||||||||||||||||||| |||    
T  25521041 cttggaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggtgtcgcatgtgacaccatgcc---atgagcagcaatcagtcccatattt 25520945  T
Q  119 ccatgtt 125  Q
    |||||||    
T  25520944 ccatgtt 25520938  T

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