View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8294A_low_288 (Length: 235)
Name: NF8294A_low_288
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_288 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 4337875 - 4338102
Alignment:
| Q |
1 |
aatatccatacgcatgtccccaaaattattctctccatcaacaaaaaccctttttcccattcatacaaacaaatcaatcaccatcaccaataacagcaac |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4337875 |
aatatccatacgcatgtccccaaaactattctctccatcaacaaaaaccctttttcccattcatacaaacaaatcaatcaccatcaccaacaacagcaac |
4337974 |
T |
|
| Q |
101 |
agaacaaagctatcgttgctctgtttaagttcaagaaacggaacagagtgtcctgttccgttagaacagcagcccataaacgagtaccagtcgttatcga |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4337975 |
agaacaaagctatcgttgctctatttaagttcaagaaacggaacagagtgtcctgttccgttagaacagcagcccataaacgagtaccagtcgttatcga |
4338074 |
T |
|
| Q |
201 |
cctcgttcccgttttcatcggctgctgg |
228 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
4338075 |
cctcgttcccgttttcatgggctgctgg |
4338102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 4321695 - 4321744
Alignment:
| Q |
130 |
ttcaagaaacggaacagagtgtcctgttccgttagaacagcagcccataa |
179 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
4321695 |
ttcaagaaacggagcagtgtgtcctgttccgcaagaacagcaacccataa |
4321744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University