View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_297 (Length: 232)

Name: NF8294A_low_297
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_297
NF8294A_low_297
[»] chr7 (11 HSPs)
chr7 (19-211)||(15448080-15448275)
chr7 (46-211)||(15428567-15428735)
chr7 (46-211)||(15486962-15487130)
chr7 (18-207)||(15539234-15539429)
chr7 (121-207)||(15480079-15480171)
chr7 (106-191)||(15432026-15432111)
chr7 (106-191)||(15490381-15490466)
chr7 (18-75)||(16944932-16944989)
chr7 (23-75)||(15431930-15431982)
chr7 (23-76)||(15558420-15558473)
chr7 (106-146)||(15558512-15558552)
[»] scaffold1195 (1 HSPs)
scaffold1195 (18-76)||(1065-1123)


Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 15448080 - 15448275
Alignment:
Q  19 cttatagccatctgacaacacaaattccagtaccaattcaagccaaaatcatatgatgaagttnnnnnnngtggctga---ggcggtttatcaccattgc 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||   ||||| |||||||||||||    
T  15448080 cttatagccatccgacaacacaaattccagtaccaattcaagccaaaatcatatgatgaagttaaaaaaagtggctgaggcggcggcttatcaccattgc 15448179  T
Q  116 attgcagaaattacgcaaatcattgtttttccatgctaatttatttcgtacaaaatattacgaaatagcggctataacaatgctataacacttttt 211  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  15448180 attgtagaaattatgcaaatcattgtttttccatgctaatatatttcgtacaaaatattacgaaatagcggctataacactgctatagcacttttt 15448275  T

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Target: chr7; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 46 - 211
Target Start/End: Original strand, 15428567 - 15428735
Alignment:
Q  46 cagtaccaattcaagccaaaatcatatgatgaagttnnnnnnngtggctga---ggcggtttatcaccattgcattgcagaaattacgcaaatcattgtt 142  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||   ||||| ||||||||||||||||| |||||||| |||||||||||||    
T  15428567 cagtaccaattcaagccaaaatcatatgatgaagttaaaaaaagtggctgaggcggcggcttatcaccattgcattgtagaaattatgcaaatcattgtt 15428666  T
Q  143 tttccatgctaatttatttcgtacaaaatattacgaaatagcggctataacaatgctataacacttttt 211  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  15428667 tttccatgctaatatatttcgtacaaaatattacgaaatagcggctataacactgctatagcacttttt 15428735  T

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Target: chr7; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 46 - 211
Target Start/End: Original strand, 15486962 - 15487130
Alignment:
Q  46 cagtaccaattcaagccaaaatcatatgatgaagttnnnnnnngtggctga---ggcggtttatcaccattgcattgcagaaattacgcaaatcattgtt 142  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||   ||||| ||||||||||||||||| |||||||| |||||||||||||    
T  15486962 cagtaccaattcaagccaaaatcatatgatgaagttaaaaaaagtggctgaggcggcggcttatcaccattgcattgtagaaattatgcaaatcattgtt 15487061  T
Q  143 tttccatgctaatttatttcgtacaaaatattacgaaatagcggctataacaatgctataacacttttt 211  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  15487062 tttccatgctaatatatttcgtacaaaatattacgaaatagcggctataacactgctatagcacttttt 15487130  T

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Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 15539234 - 15539429
Alignment:
Q  18 acttatagccatctgacaacacaaattccagtaccaattcaagccaaaatcatatgatga---agttnnnnnnngtggctgaggcggtt---tatcacca 111  Q
    |||| |||||||||||||| |  ||||||||||||||||||||||||||||||||| | |   | |        ||||||||||||||    ||||||||    
T  15539234 acttgtagccatctgacaaaaacaattccagtaccaattcaagccaaaatcatatgctaatttattgttaaatagtggctgaggcggtggtatatcacca 15539333  T
Q  112 ttgcattgcagaaattacgcaaatcattgtttttccatgctaatttatttcgtacaaaatattacgaaatagcggctataacaatgctataacact 207  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| |||||||||| || |||| ||| ||||||| ||||    
T  15539334 ttgcattgcagaaattacccaaatcattgtttttctatgctaatttattttgtacaaaattttacgaaataacgactatgacactgctatagcact 15539429  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 15480171 - 15480079
Alignment:
Q  121 agaaattacgcaaatcattgtttttcc------atgctaatttatttcgtacaaaatattacgaaatagcggctataacaatgctataacact 207  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| ||||||| ||  ||||||| ||||    
T  15480171 agaaattacgcaaatcattgtttttctttttctatgctaatttatttcgtacaaaatattacgaaataacggctatgacgctgctatagcact 15480079  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 191
Target Start/End: Original strand, 15432026 - 15432111
Alignment:
Q  106 tcaccattgcattgcagaaattacgcaaatcattgtttttccatgctaatttatttcgtacaaaatattacgaaatagcggctata 191  Q
    ||||||||||||||||||| |||| |||||||||||||||    | || ||||||| | ||||| |||||||||||||||||||||    
T  15432026 tcaccattgcattgcagaatttacacaaatcattgtttttttgcgatactttatttagcacaaagtattacgaaatagcggctata 15432111  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 191
Target Start/End: Original strand, 15490381 - 15490466
Alignment:
Q  106 tcaccattgcattgcagaaattacgcaaatcattgtttttccatgctaatttatttcgtacaaaatattacgaaatagcggctata 191  Q
    ||||||||||||| ||||| |||| |||||||||||||||    | || ||||||| | ||||| |||||||||||||||||||||    
T  15490381 tcaccattgcattccagaatttacacaaatcattgtttttttgcgatactttatttagcacaaagtattacgaaatagcggctata 15490466  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 16944932 - 16944989
Alignment:
Q  18 acttatagccatctgacaacacaaattccagtaccaattcaagccaaaatcatatgat 75  Q
    |||| |||||||||| ||||||||||||| | |||||||||| ||||||||| |||||    
T  16944932 acttgtagccatctgccaacacaaattcctgcaccaattcaaaccaaaatcagatgat 16944989  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 15431930 - 15431982
Alignment:
Q  23 tagccatctgacaacacaaattccagtaccaattcaagccaaaatcatatgat 75  Q
    |||||||||| ||||||||||||| | |||||||||| ||||||||| |||||    
T  15431930 tagccatctgccaacacaaattcctgcaccaattcaaaccaaaatcagatgat 15431982  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 15558420 - 15558473
Alignment:
Q  23 tagccatctgacaacacaaattccagtaccaattcaagccaaaatcatatgatg 76  Q
    |||||||||| ||||||||||||| | |||||||||| ||||||| | ||||||    
T  15558420 tagccatctgccaacacaaattcctgcaccaattcaaaccaaaataagatgatg 15558473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 15558512 - 15558552
Alignment:
Q  106 tcaccattgcattgcagaaattacgcaaatcattgtttttc 146  Q
    ||||||||||||||||||| |||| |||||||||| |||||    
T  15558512 tcaccattgcattgcagaatttacacaaatcattgattttc 15558552  T

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Target: scaffold1195 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1195
Description:

Target: scaffold1195; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 1065 - 1123
Alignment:
Q  18 acttatagccatctgacaacacaaattccagtaccaattcaagccaaaatcatatgatg 76  Q
    |||| ||||||| || ||||||||||||| | |||||||||| ||||||||||||||||    
T  1065 acttgtagccatatgccaacacaaattcctgcaccaattcaaaccaaaatcatatgatg 1123  T

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