View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_298 (Length: 231)
Name: NF8294A_low_298
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_298 |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: scaffold0279 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 21397 - 21553
Alignment:
| Q |
21 |
acagggtagctgttgtgttccttaatagaggcccacagaagcagattgatataacagctaattgggatgacattggcattccaccaaaaactgttgttca |
120 |
Q |
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| T |
21397 |
acagggtagctgttgtgttccttaatagaggcccacagaagcatatagatataacagctaattggaatgacattggcattccaccaaaaactgttgttca |
21496 |
T |
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| Q |
121 |
agcaagagacctttgggaggtaattcattgtacttttgtttacattcaatttatgtt |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21497 |
agcaagagacctttgggaggtaattcattgtacttttgttgacattcaatttatgtt |
21553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 27527516 - 27527672
Alignment:
| Q |
21 |
acagggtagctgttgtgttccttaatagaggcccacagaagcagattgatataacagctaattgggatgacattggcattccaccaaaaactgttgttca |
120 |
Q |
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| T |
27527516 |
acagggtagctgttgtgttccttaatagaggcccacagaagcatatagatataacagctaattggaatgacattggcattccaccaaaaactgttgttca |
27527615 |
T |
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| Q |
121 |
agcaagagacctttgggaggtaattcattgtacttttgtttacattcaatttatgtt |
177 |
Q |
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| T |
27527616 |
agcaagagacctttgggaggtaattcattgtacttttgttgacattcaatttatgtt |
27527672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 27533242 - 27533396
Alignment:
| Q |
23 |
agggtagctgttgtgttccttaatagaggcccacagaagcagattgatataacagctaattgggatgacattggcattccaccaaaaactgttgttcaag |
122 |
Q |
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||||||||||||||||| ||||||| |||| | |||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27533242 |
agggtagctgttgtgttgcttaataaaggcactcagaagcatatagatataacagctaattggaatgacattggcattccaccaaaaactgttgttcaag |
27533341 |
T |
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| Q |
123 |
caagagacctttgggaggtaattcattgtacttttgtttacattcaatttatgtt |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27533342 |
caagagacctttgggaggtaattcattgtacttttgttgacattcaatttatgtt |
27533396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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