View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_3 (Length: 607)

Name: NF8294A_low_3
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_3
NF8294A_low_3
[»] scaffold0135 (7 HSPs)
scaffold0135 (417-572)||(1935-2090)
scaffold0135 (417-572)||(6150-6305)
scaffold0135 (417-572)||(10365-10520)
scaffold0135 (417-572)||(14580-14735)
scaffold0135 (417-572)||(18795-18950)
scaffold0135 (417-572)||(23010-23165)
scaffold0135 (417-572)||(27225-27380)
[»] chr4 (6 HSPs)
chr4 (417-572)||(9203852-9204007)
chr4 (417-572)||(9208071-9208226)
chr4 (171-323)||(35902676-35902828)
chr4 (132-323)||(23892461-23892653)
chr4 (403-522)||(37617280-37617399)
chr4 (533-563)||(14863498-14863528)
[»] chr6 (1 HSPs)
chr6 (403-522)||(22082576-22082695)
[»] chr5 (1 HSPs)
chr5 (403-522)||(40164687-40164805)
[»] chr1 (2 HSPs)
chr1 (403-517)||(6921531-6921646)
chr1 (403-517)||(38238232-38238347)
[»] chr3 (2 HSPs)
chr3 (407-522)||(45456467-45456583)
chr3 (452-522)||(19767547-19767617)
[»] chr2 (1 HSPs)
chr2 (403-522)||(7827716-7827835)


Alignment Details
Target: scaffold0135 (Bit Score: 115; Significance: 4e-58; HSPs: 7)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 417 - 572
Target Start/End: Complemental strand, 2090 - 1935
Alignment:
Q  417 catcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatacacttttggttcatgcctaaagtttatatgtagaat 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  2090 catcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatatagttttggttcatgcctaaagtttatatgtagaat 1991  T
Q  517 cttttcnnnnnnntaatacagttgagtttagatttgttccaatatcaagacaaagc 572  Q
    ||||||       |||||||| |||||| ||| |||||||||||||||||||||||    
T  1990 cttttcaaaaaaataatacagctgagttcagagttgttccaatatcaagacaaagc 1935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 417 - 572
Target Start/End: Complemental strand, 6305 - 6150
Alignment:
Q  417 catcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatacacttttggttcatgcctaaagtttatatgtagaat 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  6305 catcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatatagttttggttcatgcctaaagtttatatgtagaat 6206  T
Q  517 cttttcnnnnnnntaatacagttgagtttagatttgttccaatatcaagacaaagc 572  Q
    ||||||       |||||||| |||||| ||| |||||||||||||||||||||||    
T  6205 cttttcaaaaaaataatacagctgagttcagagttgttccaatatcaagacaaagc 6150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 417 - 572
Target Start/End: Complemental strand, 10520 - 10365
Alignment:
Q  417 catcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatacacttttggttcatgcctaaagtttatatgtagaat 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  10520 catcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatatagttttggttcatgcctaaagtttatatgtagaat 10421  T
Q  517 cttttcnnnnnnntaatacagttgagtttagatttgttccaatatcaagacaaagc 572  Q
    ||||||       |||||||| |||||| ||| |||||||||||||||||||||||    
T  10420 cttttcaaaaaaataatacagctgagttcagagttgttccaatatcaagacaaagc 10365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 417 - 572
Target Start/End: Complemental strand, 14735 - 14580
Alignment:
Q  417 catcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatacacttttggttcatgcctaaagtttatatgtagaat 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  14735 catcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatatagttttggttcatgcctaaagtttatatgtagaat 14636  T
Q  517 cttttcnnnnnnntaatacagttgagtttagatttgttccaatatcaagacaaagc 572  Q
    ||||||       |||||||| |||||| ||| |||||||||||||||||||||||    
T  14635 cttttcaaaaaaataatacagctgagttcagagttgttccaatatcaagacaaagc 14580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #5
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 417 - 572
Target Start/End: Complemental strand, 18950 - 18795
Alignment:
Q  417 catcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatacacttttggttcatgcctaaagtttatatgtagaat 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  18950 catcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatatagttttggttcatgcctaaagtttatatgtagaat 18851  T
Q  517 cttttcnnnnnnntaatacagttgagtttagatttgttccaatatcaagacaaagc 572  Q
    ||||||       |||||||| |||||| ||| |||||||||||||||||||||||    
T  18850 cttttcaaaaaaataatacagctgagttcagagttgttccaatatcaagacaaagc 18795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #6
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 417 - 572
Target Start/End: Complemental strand, 23165 - 23010
Alignment:
Q  417 catcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatacacttttggttcatgcctaaagtttatatgtagaat 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  23165 catcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatatagttttggttcatgcctaaagtttatatgtagaat 23066  T
Q  517 cttttcnnnnnnntaatacagttgagtttagatttgttccaatatcaagacaaagc 572  Q
    ||||||       |||||||| |||||| ||| |||||||||||||||||||||||    
T  23065 cttttcaaaaaaataatacagctgagttcagagttgttccaatatcaagacaaagc 23010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #7
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 417 - 572
Target Start/End: Complemental strand, 27380 - 27225
Alignment:
Q  417 catcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatacacttttggttcatgcctaaagtttatatgtagaat 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  27380 catcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatatagttttggttcatgcctaaagtttatatgtagaat 27281  T
Q  517 cttttcnnnnnnntaatacagttgagtttagatttgttccaatatcaagacaaagc 572  Q
    ||||||       |||||||| |||||| ||| |||||||||||||||||||||||    
T  27280 cttttcaaaaaaataatacagctgagttcagagttgttccaatatcaagacaaagc 27225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 4e-58; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 417 - 572
Target Start/End: Complemental strand, 9204007 - 9203852
Alignment:
Q  417 catcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatacacttttggttcatgcctaaagtttatatgtagaat 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  9204007 catcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatatagttttggttcatgcctaaagtttatatgtagaat 9203908  T
Q  517 cttttcnnnnnnntaatacagttgagtttagatttgttccaatatcaagacaaagc 572  Q
    ||||||       |||||||| |||||| ||| |||||||||||||||||||||||    
T  9203907 cttttcaaaaaaataatacagctgagttcagagttgttccaatatcaagacaaagc 9203852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 417 - 572
Target Start/End: Complemental strand, 9208226 - 9208071
Alignment:
Q  417 catcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatacacttttggttcatgcctaaagtttatatgtagaat 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  9208226 catcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatatagttttggttcatgcctaaagtttatatgtagaat 9208127  T
Q  517 cttttcnnnnnnntaatacagttgagtttagatttgttccaatatcaagacaaagc 572  Q
    ||||||       |||||||| |||||| ||| |||||||||||||||||||||||    
T  9208126 cttttcaaaaaaataatacagctgagttcagagttgttccaatatcaagacaaagc 9208071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 171 - 323
Target Start/End: Complemental strand, 35902828 - 35902676
Alignment:
Q  171 tcctcaccaatcatgatctttaaatttgtcatagaagcaaaagaacaatttaaaaaatataaaggatcattaagacgaaactgaatataaaatgagacta 270  Q
    ||||||| | |||||||| |||||||||||||| |||  |||||||||||| ||||| |||||||||||||| ||| ||| |||||| ||||||||||||    
T  35902828 tcctcacaactcatgatccttaaatttgtcataaaagtgaaagaacaatttgaaaaaaataaaggatcattaggactaaa-tgaataaaaaatgagacta 35902730  T
Q  271 ta-tatgaccaaactgaaactaaaaattagataaagaatctaattaaaactaaa 323  Q
    || |||||||||||||||  ||||| | |||||||||| |||| ||||||||||    
T  35902729 tattatgaccaaactgaatttaaaagtaagataaagaacctaactaaaactaaa 35902676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 132 - 323
Target Start/End: Complemental strand, 23892653 - 23892461
Alignment:
Q  132 cctcacatgttaagcaatgttttccttctgaaatttcagtcctcaccaatcatgatctttaaatttgtcatagaagcaaaagaacaatttaaaaaatata 231  Q
    |||| |||||| | |||||||| |||| |||||||  | ||||| | | |||||||| ||||||||||||||||||| |||||||||||| ||||| |||    
T  23892653 cctctcatgttcaacaatgtttaccttttgaaattgtaatcctcgcaactcatgatccttaaatttgtcatagaagcgaaagaacaatttgaaaaaaata 23892554  T
Q  232 aaggatcattaagacgaaactgaatataaaatgagactata-tatgaccaaactgaaactaaaaattagataaagaatctaattaaaactaaa 323  Q
    |||| |||||| ||| ||| ||||||||||||||||| ||| ||||| ||||||| |  ||||||| ||||||| || | || ||||||||||    
T  23892553 aagggtcattaggactaaattgaatataaaatgagacaatattatgagcaaactggatttaaaaataagataaataaccaaactaaaactaaa 23892461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 403 - 522
Target Start/End: Original strand, 37617280 - 37617399
Alignment:
Q  403 agacacattctcaacatcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatacacttttggttcatgcctaaag 502  Q
    ||||||||||||||||| ||| |  |||||||| | |||| |||||| |||| |||| |||||| ||||||  || |||| |||||||||||||||||||    
T  37617280 agacacattctcaacataaaatatcatgctaaatagctttttgagttataggctgctttaagatccaaatgtgtcgtacatttttggttcatgcctaaag 37617379  T
Q  503 tttatatgtagaatcttttc 522  Q
    ||| |||| |||||| ||||    
T  37617380 tttttatgaagaatcctttc 37617399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 533 - 563
Target Start/End: Original strand, 14863498 - 14863528
Alignment:
Q  533 tacagttgagtttagatttgttccaatatca 563  Q
    |||||||||||||||||||||||||||||||    
T  14863498 tacagttgagtttagatttgttccaatatca 14863528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 403 - 522
Target Start/End: Complemental strand, 22082695 - 22082576
Alignment:
Q  403 agacacattctcaacatcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatacacttttggttcatgcctaaag 502  Q
    ||||||||||||||||| ||| |  |||||||| | |||| |||||| ||||||| | |||||| ||||||  || |||| |||||||||||||||||||    
T  22082695 agacacattctcaacataaaatatcatgctaaatagctttttgagttataggttgttttaagatccaaatgtgtcgtacatttttggttcatgcctaaag 22082596  T
Q  503 tttatatgtagaatcttttc 522  Q
    ||| |||| |||||| ||||    
T  22082595 tttttatgaagaatcctttc 22082576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 522
Target Start/End: Complemental strand, 40164805 - 40164687
Alignment:
Q  403 agacacattctcaacatcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatacacttttggttcatgcctaaag 502  Q
    ||||||||| ||||||| ||| |  |||||||| |||||| |||||| ||||||||| |||||| ||||||  || |||| |||| ||||| ||||||||    
T  40164805 agacacattatcaacataaaatatcatgctaaataactttttgagttataggttgctttaagatccaaatgtgtcgtacatttttagttcaagcctaaag 40164706  T
Q  503 tttatatgtagaatcttttc 522  Q
    ||| |||| |||||| ||||    
T  40164705 ttt-tatgaagaatcctttc 40164687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 517
Target Start/End: Complemental strand, 6921646 - 6921531
Alignment:
Q  403 agacacattctcaacatcaaacacaatgctaaacaa-ctttgtgagttgtaggttgctataagattcaaatgcatcatacacttttggttcatgcctaaa 501  Q
    ||||||||||||||||| ||| |  |||||||| || | || || ||| ||||||||| |||||| ||||||  ||||||| ||||||||||||||||||    
T  6921646 agacacattctcaacataaaatatcatgctaaataaaccttttgggttataggttgctttaagatccaaatgtgtcatacatttttggttcatgcctaaa 6921547  T
Q  502 gtttatatgtagaatc 517  Q
    | || |||| ||||||    
T  6921546 gattttatgaagaatc 6921531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 517
Target Start/End: Original strand, 38238232 - 38238347
Alignment:
Q  403 agacacattctcaacatcaaacacaatgctaaacaa-ctttgtgagttgtaggttgctataagattcaaatgcatcatacacttttggttcatgcctaaa 501  Q
    ||||||||||||||||| ||| |  |||||||| || | || || ||| ||||||||| |||||| ||||||  ||||||| ||||||||||||||||||    
T  38238232 agacacattctcaacataaaatatcatgctaaataaaccttttgggttataggttgctttaagatccaaatgtgtcatacatttttggttcatgcctaaa 38238331  T
Q  502 gtttatatgtagaatc 517  Q
    | || |||| ||||||    
T  38238332 gattttatgaagaatc 38238347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 522
Target Start/End: Original strand, 45456467 - 45456583
Alignment:
Q  407 acattctcaacatcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatca-tacacttttggttcatgcctaaagttt 505  Q
    ||||||||||||| ||| |  |||||||| ||| || || ||| ||||||||| |||||| ||||||  ||| |||| ||||||||||||||||||| ||    
T  45456467 acattctcaacataaaatatcatgctaaataaccttttgggttataggttgctttaagatccaaatgtgtcaatacatttttggttcatgcctaaagatt 45456566  T
Q  506 atatgtagaatcttttc 522  Q
     |||| |||||| ||||    
T  45456567 ttatgaagaatcctttc 45456583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 522
Target Start/End: Complemental strand, 19767617 - 19767547
Alignment:
Q  452 aggttgctataagattcaaatgcatcatacacttttggttcatgcctaaagtttatatgtagaatcttttc 522  Q
    |||||||| |||||| ||||||  || |||| |||| ||||||||||||||||| |||| |||||| ||||    
T  19767617 aggttgctttaagatccaaatgtgtcgtacattttttgttcatgcctaaagtttttatgaagaatcctttc 19767547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 522
Target Start/End: Original strand, 7827716 - 7827835
Alignment:
Q  403 agacacattctcaacatcaaacacaatgctaaacaactttgtgagttgtaggttgctataagattcaaatgcatcatacacttttggttcatgcctaaag 502  Q
    ||||||||||||| ||| ||| | ||||||||| |||||| ||||||    |||||  |||||||||||||  | ||||| |||||||| | ||||||||    
T  7827716 agacacattctcagcataaaagataatgctaaataactttttgagttacttgttgcattaagattcaaatgtgtaatacatttttggttaaggcctaaag 7827815  T
Q  503 tttatatgtagaatcttttc 522  Q
    || ||||  |||||| ||||    
T  7827816 ttgatataaagaatcctttc 7827835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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