View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_300 (Length: 231)
Name: NF8294A_low_300
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_300 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 2727475 - 2727700
Alignment:
| Q |
6 |
aaatagtctatacatcaacactaatctaataagtgcttaattaacctttttattcaaacaaatcataacaactaactcattacttagagaataattttta |
105 |
Q |
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| T |
2727475 |
aaatagtctatacatcaacactaatctaataagtgcttaattaacctttttattcaaacaaatcataacaactaactcattacttagagaataattttta |
2727574 |
T |
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| Q |
106 |
tgtactatcagtgtaaaactttctatagcgtcaaccgatcacaaaccatcacatttgtctgacttttaatttgatataatggaagtcaaacttttacatg |
205 |
Q |
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| T |
2727575 |
tgtactatcagtgtaaaactttctatagcgtcaaccgatcacaaaccatcacatttgtctgacttttaatttgatataatggaagtcaaacttttacatg |
2727674 |
T |
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| Q |
206 |
atcgaacaattatgatcgactgacag |
231 |
Q |
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| T |
2727675 |
atcgaacaattatgatcgactgacag |
2727700 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 40263923 - 40264015
Alignment:
| Q |
138 |
aaccgatcacaaaccatcacatttgtctgactttt-aatttgatataatggaagtcaaacttttacatgatcgaacaattatgatcgactgacag |
231 |
Q |
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| T |
40263923 |
aaccgatcacaatccatca--tttgtaagactttttaattagatatgatgaaagtcaaactttttagtgatcgaacagttatgattgactgacag |
40264015 |
T |
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