View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_316 (Length: 230)
Name: NF8294A_low_316
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_316 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 81 - 224
Target Start/End: Original strand, 56069678 - 56069817
Alignment:
| Q |
81 |
ggaaacatcgtcgatgaaattggaaagaaacgagaaattaacagcagatgcatttaactcaattttgtcaagttttggaaaagtaaattaactaaagtgt |
180 |
Q |
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| T |
56069678 |
ggaaaaatcgtcgatgaaattggaaagaaacgagaaattaacagcagatgcatttaactcaattttgtcaagttttggaaaagtaaat----taaagtgt |
56069773 |
T |
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| Q |
181 |
gcttaccagtttctgccatttgtggtacacctctgtgatgtttt |
224 |
Q |
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| T |
56069774 |
gcttaccagtttctgccatttgtggtacacctctgtgatgtttt |
56069817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 56069565 - 56069644
Alignment:
| Q |
1 |
gccaggatcggttcagcgggaaagtatgtttccagagtgtcataagaccaggtggcagtgttcctaatttccataattgt |
80 |
Q |
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| T |
56069565 |
gccaggatcggttcagcgggaaagtatgtttccagaatgtcataagaccaggtggcagtgttcctaatttccataattgt |
56069644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 38398594 - 38398501
Alignment:
| Q |
126 |
agatgcatttaactcaattttgtcaagttttggaaaagtaaattaactaaagtgtgcttaccagtttctgccatttgtggtacacctctgtgatgtttt |
224 |
Q |
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| T |
38398594 |
agatgcatttcactcaattttgtgatgttttggaaaagtagattaa----agtgt-cttaccagcttctgccaattgtggtacacctctgtgatgtttt |
38398501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 38398774 - 38398695
Alignment:
| Q |
1 |
gccaggatcggttcagcgggaaagtatgtttccagagtgtcataagaccaggtggcagtgttcctaatttccataattgt |
80 |
Q |
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| T |
38398774 |
gccaagatcggttcagcgggaacgtgcgtttccagaatgttataagaccaggtggcagtgttcctaacttccatagttgt |
38398695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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