View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_325 (Length: 229)

Name: NF8294A_low_325
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_325
NF8294A_low_325
[»] chr8 (8 HSPs)
chr8 (1-224)||(3067552-3067775)
chr8 (9-221)||(3055555-3055767)
chr8 (13-221)||(3071203-3071411)
chr8 (13-224)||(3034690-3034901)
chr8 (11-221)||(3040546-3040756)
chr8 (9-167)||(3042789-3042947)
chr8 (42-167)||(3063557-3063682)
chr8 (9-148)||(25125327-25125466)


Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 3067552 - 3067775
Alignment:
Q  1 ttgtttcccttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgaca 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3067552 ttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgaca 3067651  T
Q  101 ccgacatgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcaggc 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3067652 ccgacgtgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcaggc 3067751  T
Q  201 tgagaccacactatagtccaacct 224  Q
    ||||||||||||||||||||||||    
T  3067752 tgagaccacactatagtccaacct 3067775  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 3055767 - 3055555
Alignment:
Q  9 cttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacatg 108  Q
    |||||||||||||||||| |||| ||||||| |||||||||||||||||||| |||||| |||||||| ||||||||||| | |||| ||||| ||||||    
T  3055767 cttagttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaagtggatcatcaggatcaaccagtgagtatcgttttggacactgacatg 3055668  T
Q  109 ttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcaggctgagacca 208  Q
    |||| |||||||   |||||||||||||| ||||||||||||||||||||||||| |||   |||| || ||||| ||||||||| ||||| | ||||||    
T  3055667 ttggtctcttatcaactcccaaagtgcagaagctattatatccacaaacaccactcccttcattagcaatataattacatatattatcaggtttagacca 3055568  T
Q  209 cactatagtccaa 221  Q
    |||||| ||||||    
T  3055567 cactatggtccaa 3055555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 3071203 - 3071411
Alignment:
Q  13 gttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacatgttgg 112  Q
    |||||||||||||| |||| |||||||  ||||||||||||||||||  |||||| |||||||| | ||||||||||| |||| ||||||||||||||||    
T  3071203 gttcatcttctgcacatccttgtatgaaatctggcttgcagctaccatgtggatcatcaggatcaagcagtgagtaacgttttggacaccgacatgttgg 3071302  T
Q  113 cctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcaggctgagaccacact 212  Q
     |||||||  |||||||||||||||  | |||||||||||||||||||||||||| |  ||  || ||| ||||||||||||| ||| ||||||||||||    
T  3071303 tctcttatcatctcccaaagtgcagatggtattatatccacaaacaccactacctgaactaacaatatattgacatatatttttaggatgagaccacact 3071402  T
Q  213 atagtccaa 221  Q
     ||||||||    
T  3071403 gtagtccaa 3071411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 3034901 - 3034690
Alignment:
Q  13 gttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacatgttgg 112  Q
    |||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||| ||||| | |||| ||||| ||||| | ||    
T  3034901 gttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaaatggatcttcaggatcaaccagcgagtatcgttttggacactgacatttcgg 3034802  T
Q  113 cctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcaggctgagaccacact 212  Q
     |||||||   || ||||||||||  |||||||||||||||||||||||||||||    ||  || ||||  ||||||||| ||||||| ||||||||||    
T  3034801 tctcttatcaacttccaaagtgcataagctattatatccacaaacaccactacctgcactaacaatataagtacatatattatcaggcttagaccacact 3034702  T
Q  213 atagtccaacct 224  Q
     | |||||||||    
T  3034701 gtggtccaacct 3034690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 3040756 - 3040546
Alignment:
Q  11 tagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacatgtt 110  Q
    |||||||||||||||| |||| |||| ||  |||||||||||||||||| | |||| ||||||||| || ||||||||||| | | |||||||| ||| |    
T  3040756 tagttcatcttctgcacatccttgtacgaaatctggcttgcagctaccataaggatagtcaggatcaactagtgagtaactatctggacaccgaaatgct 3040657  T
Q  111 ggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcaggctgagaccaca 210  Q
    || ||| |||  ||||||||||||||   ||||||||||||||||||||||||||||    ||  |||||||||||||||||||  ||| ||||||||||    
T  3040656 ggtctcgtatcatctcccaaagtgcatatgctattatatccacaaacaccactaccttcagtaacaaaataatgacatatatttcgaggatgagaccaca 3040557  T
Q  211 ctatagtccaa 221  Q
    || ||||||||    
T  3040556 ctgtagtccaa 3040546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 3042947 - 3042789
Alignment:
Q  9 cttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacatg 108  Q
    |||||||||||||||||| |||| || |||| || ||||| |||  |||||| |||||| || | ||| |||||||||||||||||| ||||| ||||||    
T  3042947 cttagttcatcttctgcacatccttgcatgaagtttggctcgcaagtaccaagtggatcatcggcatcaaccagtgagtaactttttggacactgacatg 3042848  T
Q  109 ttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacct 167  Q
    |||| | |||||   |||||||||||||| |||||||||||||||||||||||||||||    
T  3042847 ttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacct 3042789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 42 - 167
Target Start/End: Original strand, 3063557 - 3063682
Alignment:
Q  42 tctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacatgttggcctcttattctctcccaaagtgcagtagc 141  Q
    |||||||||||||| ||| ||||||| | |||||| | |||||||||   |||| ||||| ||||| |||| |||||||  ||||||||||||||| |||    
T  3063557 tctggcttgcagctgccatatggatcattaggatcaatcagtgagtactgttttggacactgacattttggtctcttatcatctcccaaagtgcagaagc 3063656  T
Q  142 tattatatccacaaacaccactacct 167  Q
    ||||||||||||||||||||||||||    
T  3063657 tattatatccacaaacaccactacct 3063682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 25125327 - 25125466
Alignment:
Q  9 cttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacatg 108  Q
    ||||||||||||||| || |||| || |||| |||| ||| |||  |||||| |||||| || ||||| |||||||||||||||||| ||||| ||||||    
T  25125327 cttagttcatcttctccacatccttgcatgaagtcttgctcgcaagtaccaagtggatcatcgggatcaaccagtgagtaactttttggacactgacatg 25125426  T
Q  109 ttggcctcttattctctcccaaagtgcagtagctattata 148  Q
    |||| |||||||   |||||||||||||| ||||||||||    
T  25125427 ttggtctcttatcaactcccaaagtgcagaagctattata 25125466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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