View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_33 (Length: 420)
Name: NF8294A_low_33
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 30 - 418
Target Start/End: Original strand, 35879184 - 35879570
Alignment:
| Q |
30 |
cattgtcaaaggtgagactctaacacacaaaaaatgcggagaaaaagagtattgaaaattcaatctcggccttgatacatcaaatatttttgcagtaatt |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35879184 |
cattgtcaaaggtgagactctaacacacaaaaaatgcggagaaaaagagtattgaaaattcaatctcggccttgacacatcaaatatttttgcagtaatt |
35879283 |
T |
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| Q |
130 |
ttatcatttgacttgcaggcttatatttatatatttgttaacaaaaagaattggtatagaagtaggaactgcttcaatttatttgtaaggttgccatgat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35879284 |
ttatcatttgacttgcaggcttatatttatatatttgttaactaaaagaattggtatagaagtaggaactgcttcaatttatttgtaaggttgccatgat |
35879383 |
T |
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| Q |
230 |
ttttaaacgtggaaccaaacactagtaatatgatggtaaaagaaagaagacaacgttaccacgtgccagggcaggtgagatgccgtatcagcaagcttcc |
329 |
Q |
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| T |
35879384 |
tttcaaacttggaaccaaacactagtaatatgatggcaaaagaaagaagacaacgttaccacgtgccagggcaggtgagatgccgtatcagcaagcttcc |
35879483 |
T |
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| Q |
330 |
aaagtcatctatgaattttttaccaccgtgtgtatgtatacatgaggtttcgttgcttacttgcttatgtaccaatagtccaataccat |
418 |
Q |
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| T |
35879484 |
aaagtcatctatgaattttttaccacc--gtgtatgtatacatgaggtttcgttgcttacttgcttatgtaccaatagtccaataccat |
35879570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 30 - 418
Target Start/End: Original strand, 24453385 - 24453771
Alignment:
| Q |
30 |
cattgtcaaaggtgagactctaacacacaaaaaatgcggagaaaaagagtattgaaaattcaatctcggccttgatacatcaaatatttttgcagtaatt |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24453385 |
cattgtcaaaggtgagactctaacacacaaaaaatgcggagaaaaagagtattgaaaattcaatctcggccttgacacatcaaatatttttgcagtaatt |
24453484 |
T |
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| Q |
130 |
ttatcatttgacttgcaggcttatatttatatatttgttaacaaaaagaattggtatagaagtaggaactgcttcaatttatttgtaaggttgccatgat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24453485 |
ttatcatttgacttgcaggcttatatttatatatttgttaactaaaagaattggtatagaagtaggaactgcttcaatttatttgtaaggttgccatgat |
24453584 |
T |
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| Q |
230 |
ttttaaacgtggaaccaaacactagtaatatgatggtaaaagaaagaagacaacgttaccacgtgccagggcaggtgagatgccgtatcagcaagcttcc |
329 |
Q |
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||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24453585 |
tttcaaacttggaaccaaacactagtaatatgatggcaaaagaaagaagacaacgttaccacgtgccagggcaggtgagatgccgtatcagcaagcttcc |
24453684 |
T |
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| Q |
330 |
aaagtcatctatgaattttttaccaccgtgtgtatgtatacatgaggtttcgttgcttacttgcttatgtaccaatagtccaataccat |
418 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24453685 |
aaagtcatctatgaattttttaccacc--gtgtatgtatacatgaggtttcgttgcttacttgcttatgtaccaatagtccaataccat |
24453771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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