View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_337 (Length: 228)
Name: NF8294A_low_337
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_337 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 30516813 - 30517034
Alignment:
| Q |
7 |
gtgagctgtacaaggaagaaatttgttgacttgtagcatcatgagaaacatccttaacattaacattaatgtttcctagtggaagtgaagttgtagtact |
106 |
Q |
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| T |
30516813 |
gtgagctgtacaaggaagaaatttgttgacttgtagcatcatgagaaacatccttaacattaacattaatgtttcctagtggaagtgaagttgtagtact |
30516912 |
T |
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| Q |
107 |
agtaattaactcttggctgcaattgtttgaaagtttagttcccaaaacccactttagctgataattattagaatatggtggagggttctcatttccacca |
206 |
Q |
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| T |
30516913 |
agtaattaattcttggctgcaattgtttgaaagtttagttccaaaaacccaatttagctgataattattagaatatggtggagggttctcatttccacca |
30517012 |
T |
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| Q |
207 |
tacataatttctcttgaagatg |
228 |
Q |
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||||||||||||||||| |||| |
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| T |
30517013 |
tacataatttctcttgatgatg |
30517034 |
T |
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