View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8294A_low_34 (Length: 419)
Name: NF8294A_low_34
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_34 |
 | |
|
| [»] scaffold0034 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 409
Target Start/End: Original strand, 7926878 - 7927278
Alignment:
| Q |
9 |
aacaaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacag |
108 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| || || | ||||||| |
|
|
| T |
7926878 |
aacaaaatcataatagccaggcatatcttgccaacacttcaacagacgcaccggtctcggaccccaattctcttcatccacagacaatacgataggacag |
7926977 |
T |
|
| Q |
109 |
tgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaac |
208 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
7926978 |
tgatcagataaacctcttaagtgtgccacctgaatgcagttaggccacaccaaacaccattcttcagagagcaagaacctatccaatctactcatcgagc |
7927077 |
T |
|
| Q |
209 |
gtccatcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagc |
308 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7927078 |
gtccatcccccttaaaccaagtaaacttcctcccacataaaggtaaatcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatccac |
7927177 |
T |
|
| Q |
309 |
cacctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctc |
408 |
Q |
| |
|
|| |||||| || ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7927178 |
caactgagaccctctaaccgaacgcctttcttcgactgaccgcacagtgttgaaatccccgcaaacacaaaccttgttattccctaaagaaagcaacctc |
7927277 |
T |
|
| Q |
409 |
g |
409 |
Q |
| |
|
| |
|
|
| T |
7927278 |
g |
7927278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 410
Target Start/End: Original strand, 8302296 - 8302697
Alignment:
| Q |
9 |
aacaaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacag |
108 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| || |||| ||||||| ||||||||| ||||||||||||||||||||||| ||||| | ||||| |
|
|
| T |
8302296 |
aacaaaatcattataaccaggcatatcttgccaacatttcaggagacgcaccggtctcggcccccaattctcttcatccacagacaacacaatgggacaa |
8302395 |
T |
|
| Q |
109 |
tgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaac |
208 |
Q |
| |
|
||||||||||| |||||||| || || | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8302396 |
tgatcagataaacctcttaactgagctatctgaatgcaattaggccacaccatacaccattcttcagagagcaagaacctatccaacctactcatcgaac |
8302495 |
T |
|
| Q |
209 |
gtccatcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagc |
308 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||| || ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | | |
|
|
| T |
8302496 |
gaccatcccccttataccaagtaaacttcctcccacttagcggtaaatcaatcaaaactcgatcttcaataaaatcattaaaaggtgcacaatcagctac |
8302595 |
T |
|
| Q |
309 |
cacctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctc |
408 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||| || |||||||| || || ||||| |||||||||||||||||| |
|
|
| T |
8302596 |
cacctgagaacccctaaccgaccgcctttcttcaactgaccgcacagtgttaaaatctccacaaacacacactttattattacctaaagaaagcaacctc |
8302695 |
T |
|
| Q |
409 |
ga |
410 |
Q |
| |
|
|| |
|
|
| T |
8302696 |
ga |
8302697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 41663015 - 41662822
Alignment:
| Q |
9 |
aacaaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacag |
108 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| || |||| |||||||| | ||||||| ||||||||||||||||||||||| ||||| | ||| ||| |
|
|
| T |
41663015 |
aacaaaatcattataatcaggcatatcttgccaacatttcagtagacgcaccagtctcggcccccaattctcttcatccacagacaacacaatagggcag |
41662916 |
T |
|
| Q |
109 |
tgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactca |
202 |
Q |
| |
|
|||| ||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41662915 |
tgattagataatcctcttaactgagccacctgaatgcaattaggccataccaaacaccattcttcagagagcaagaacctatccaacctactca |
41662822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 263
Target Start/End: Complemental strand, 13877118 - 13876878
Alignment:
| Q |
22 |
taaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatc |
121 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |||| || |||||| ||||| || || ||||| || || ||||| | |||||| ||||| || | | |
|
|
| T |
13877118 |
taaccaggcatatcttgccaacatttcaataatcgcaacg-tctcggcccccagttttcctcatctaccgacaacacaataggacaatgatctgaaagac |
13877020 |
T |
|
| Q |
122 |
ctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccccctt |
221 |
Q |
| |
|
| ||||| || | |||||||| ||||| ||||||| ||| ||||| |||| || | ||| ||||| |||||||||||||| || || ||||||||||| |
|
|
| T |
13877019 |
cccttaagtgaccaacctgaatacaatttggccacaacaagcaccacgcttcggataacaaaaacctgtccaacctactcatagatcgaccatccccctt |
13876920 |
T |
|
| Q |
222 |
ataccaagtaaactttctcccacataacggtaggtcaatcaa |
263 |
Q |
| |
|
| |||| |||||||||| |||||||| |||| |||||||| |
|
|
| T |
13876919 |
aaaccaggtaaactttcggccacataaaggtaaatcaatcaa |
13876878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 20826793 - 20827014
Alignment:
| Q |
9 |
aacaaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacag |
108 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| || |||| ||||||| ||| ||| | |||||||| |||||||| || || ||||| | ||||| |
|
|
| T |
20826793 |
aacaaaatcattataaccaggcatgtcttgccaacatttcagaagacgcaacggcctcagtccccaattttcttcatctactgacaacacaatcggacaa |
20826892 |
T |
|
| Q |
109 |
tgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaac |
208 |
Q |
| |
|
|||| ||| | || | || || || ||||| || |||||||||||||||| |||||| |||| || | ||| || ||||||||||| |||||||| | |
|
|
| T |
20826893 |
tgattagacagaccccgtagatgagcaacctgcatacaattaggccacaccagacaccaaccttctgacaacaaaaatctatccaacctgctcatcgacc |
20826992 |
T |
|
| Q |
209 |
gtccatcccccttataccaagt |
230 |
Q |
| |
|
| |||||||||||| ||||||| |
|
|
| T |
20826993 |
gcccatcccccttaaaccaagt |
20827014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 9 - 409
Target Start/End: Complemental strand, 103490 - 103090
Alignment:
| Q |
9 |
aacaaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacag |
108 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||| ||||||| |
|
|
| T |
103490 |
aacaaaatcataatagccaggcatatcttgccaacacttcaacagacgcaccggtctcggaccccaattctcttcatccacagacaatactataggacag |
103391 |
T |
|
| Q |
109 |
tgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaac |
208 |
Q |
| |
|
|| |||||||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
103390 |
tggtcagataaacctcttaagtgtgccacctgaatgcagttgggccacaccaaacaccattcttcagagagcaagaacctatccaatctactcatcgagc |
103291 |
T |
|
| Q |
209 |
gtccatcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagc |
308 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
103290 |
gtccatcccccttaaaccaagtaaacttcctcccacataatggtaaatcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatccac |
103191 |
T |
|
| Q |
309 |
cacctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctc |
408 |
Q |
| |
|
|| |||||| || ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
103190 |
caactgagatcctctaaccgaacgcctttcttcgactgaccgcacagtgttgaaatccccgcaaacacaaaccttgttattccctaaagaaagcaacctc |
103091 |
T |
|
| Q |
409 |
g |
409 |
Q |
| |
|
| |
|
|
| T |
103090 |
g |
103090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 409
Target Start/End: Complemental strand, 4935775 - 4935375
Alignment:
| Q |
9 |
aacaaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacag |
108 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| ||||| || |||| ||||||| |
|
|
| T |
4935775 |
aacaaaatcatcatagccaggcatatcttgccaacacttcaacagacgcaccggtctcggaccccaattctcttcatctacagacaaaactataggacag |
4935676 |
T |
|
| Q |
109 |
tgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaac |
208 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||||||||| || |||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
4935675 |
tgatcagataaacctcgtaaatgtgccacctgaatgcagttcggccacaccagacaccattcttcagaaagcaagaacctatccaatctactcatcgaac |
4935576 |
T |
|
| Q |
209 |
gtccatcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagc |
308 |
Q |
| |
|
| |||||||||||| ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4935575 |
gaccatcccccttaaaccaagtaaacttcctcccacataaaggtaaatcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatccac |
4935476 |
T |
|
| Q |
309 |
cacctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctc |
408 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4935475 |
caactgagaacctctaaccgaacgcctttcttcgactgaccgcacagtgttgaaatccccacaaacacaaaccttgttattccctaaagaaagcaacctc |
4935376 |
T |
|
| Q |
409 |
g |
409 |
Q |
| |
|
| |
|
|
| T |
4935375 |
g |
4935375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 9 - 410
Target Start/End: Original strand, 29970467 - 29970868
Alignment:
| Q |
9 |
aacaaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacag |
108 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| || |||| ||||||| ||||||||| ||||||||||| ||||||||||| ||||| | ||||| |
|
|
| T |
29970467 |
aacaaaatcagtataacctggcatatcttgccaacatttcaggagacgcaccggtctcggcccccaattctcctcatccacagacaacacaatgggacaa |
29970566 |
T |
|
| Q |
109 |
tgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaac |
208 |
Q |
| |
|
||||||||||| |||||||| || || ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
29970567 |
tgatcagataaacctcttaactgagctacctgaatgcaattaggccacaccatacaccattcttcagaaagcaagaacctatccaacctactcatcaaac |
29970666 |
T |
|
| Q |
209 |
gtccatcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagc |
308 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||| || ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | | |
|
|
| T |
29970667 |
gaccatcccccttataccaagtaaacttcctcccacttagcggtaaatcaatcaaaactcgatcttcaataaaatcattaaaaggtgcacaatcagctac |
29970766 |
T |
|
| Q |
309 |
cacctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctc |
408 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| || |||||||| ||||||||||| || |||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
29970767 |
cacctgagaacccctaactgaccgcctttcttcaactgaccgcacagtgttaaaatctccacaaacacaaaccttattattacctaaagaaagcaacctc |
29970866 |
T |
|
| Q |
409 |
ga |
410 |
Q |
| |
|
|| |
|
|
| T |
29970867 |
ga |
29970868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 416
Target Start/End: Original strand, 17723128 - 17723535
Alignment:
| Q |
9 |
aacaaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacag |
108 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| || ||||| ||||||| ||| | |||||||||||||| ||||||||||| || || | ||| || |
|
|
| T |
17723128 |
aacaaaatcactataaccaggcatatcttgccaacatttcaaaagacgcaccggccgcggaccccaattcttttcatccacagtcaagacaatagggcaa |
17723227 |
T |
|
| Q |
109 |
tgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaac |
208 |
Q |
| |
|
|||||||||||||||||||| || || ||||||| ||| |||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
17723228 |
tgatcagataatcctcttaactgagcaacctgaagacaagtaggccacaccatgcaccattcttcagatagcaagaacctgtccaatgtactcatcgaac |
17723327 |
T |
|
| Q |
209 |
gtccatcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagc |
308 |
Q |
| |
|
| |||||||| ||||||||||||||||| |||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
17723328 |
ggccatccccattataccaagtaaacttcctcccacataacggtaaattaattaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcaac |
17723427 |
T |
|
| Q |
309 |
cacctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctc |
408 |
Q |
| |
|
|||||||||||||||||| || |||||||| || || |||||||| || ||||||||||| || ||||||||||| || | |||||||||||||||||| |
|
|
| T |
17723428 |
cacctgagaacccctaacagagcgcctttcatcaactgaccgcacagtattaaaatccccacacacacaaaccttactactacctaaagaaagcaacctc |
17723527 |
T |
|
| Q |
409 |
gatgaaag |
416 |
Q |
| |
|
|| ||||| |
|
|
| T |
17723528 |
gaagaaag |
17723535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 17058105 - 17058169
Alignment:
| Q |
103 |
ggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacacca |
167 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
17058105 |
ggacaatgatcagataatcctcgcaattgtgccacctgaatacaattcggccacaccaagcacca |
17058169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 264
Target Start/End: Original strand, 20658463 - 20658663
Alignment:
| Q |
64 |
ctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaac |
163 |
Q |
| |
|
||||| ||||||||||| | ||| |||||||| | || ||||| ||||| || || ||||| | ||| || |||||||||||||| ||||| || |||| |
|
|
| T |
20658463 |
ctcggcccccaattctccttatcaacagataaaatcaacggacaatgatctgacaaacctctaagttgcgcaacctgaatgcaattgggccaaactaaac |
20658562 |
T |
|
| Q |
164 |
accattcttcagagagcaagaacctatccaacctactcatcgaacgtccatcccccttataccaagtaaactttctcccacataacggtaggtcaatcaa |
263 |
Q |
| |
|
|||| |||| || | || |||| ||| | ||||||||||| | ||| ||||| || |||||||||| || |||||||| |||||||| |||||||| |
|
|
| T |
20658563 |
accactctttcgaaataaaaaaccgatcaattctactcatcgatcttccgtcccctttgaaccaagtaaaattactcccacacaacggtagatcaatcaa |
20658662 |
T |
|
| Q |
264 |
a |
264 |
Q |
| |
|
| |
|
|
| T |
20658663 |
a |
20658663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 176
Target Start/End: Original strand, 8773394 - 8773504
Alignment:
| Q |
66 |
cggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacac |
165 |
Q |
| |
|
|||||||||||| ||||||||||| || | | ||||||||||| | |||||| |||| ||| || || || ||||| ||||| |||||||| || ||| |
|
|
| T |
8773394 |
cggaccccaattttcttcatccaccgacagaatcaaaggacagtggttagataaacctcgtaaatgagcgacttgaatacaattcggccacactaagcac |
8773493 |
T |
|
| Q |
166 |
cattcttcaga |
176 |
Q |
| |
|
|| |||||||| |
|
|
| T |
8773494 |
caatcttcaga |
8773504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 417
Target Start/End: Complemental strand, 19917878 - 19917471
Alignment:
| Q |
10 |
acaaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagt |
109 |
Q |
| |
|
||||||||| || |||| |||||||||||| | |||||||| ||||||| ||||||||||||||| ||||||||||||||||| || |||| |||||| | |
|
|
| T |
19917878 |
acaaaatcataaaaacccggcatatcttgctaacacttcaacagacgcaccggtctcggaccccagttctcttcatccacagacaatactataggacaat |
19917779 |
T |
|
| Q |
110 |
gatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacg |
209 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19917778 |
gatcagataagcctcttaagtgtgccacctgaacacaattaggccacaccaaacaccaatcttcagagagcaagaacctatccaacctactcatcgaacg |
19917679 |
T |
|
| Q |
210 |
tccatcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagcc |
309 |
Q |
| |
|
|||| ||||||| ||||||||||||| |||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| || || |
|
|
| T |
19917678 |
gccattccccttaaaccaagtaaacttcctcccacataacggtaaatcaatcaagcctctatcttcaataaagtcattaaaaggtgcacaatcctctacc |
19917579 |
T |
|
| Q |
310 |
acctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcg |
409 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||| || ||||||| |
|
|
| T |
19917578 |
aactgagaacccctaaccgaacgcctttcttcaacagaccgcacagtgttgaaatccccacaaacacaaaccttgttattccctaaagagagtaacctcg |
19917479 |
T |
|
| Q |
410 |
atgaaagt |
417 |
Q |
| |
|
| |||||| |
|
|
| T |
19917478 |
aagaaagt |
19917471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 122 - 409
Target Start/End: Original strand, 2366815 - 2367102
Alignment:
| Q |
122 |
ctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccccctt |
221 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
2366815 |
ctcttaagtgtgccacctgaatgcagttaggccacaccaaacaccattcttcagagagcaagaacctatccaatctactcatcgagcgtccatccccctt |
2366914 |
T |
|
| Q |
222 |
ataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccacctgagaaccc |
321 |
Q |
| |
|
| ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
2366915 |
aaaccaagtaaacttcctcccacataatggtaaatcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatccaccaactgagaacct |
2367014 |
T |
|
| Q |
322 |
ctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcg |
409 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2367015 |
ctaaccgaacgcctttcttcgactgaccgcacagtgttgaaatccccacaaacacaaaccttgttattccctaaagaaagcaacctcg |
2367102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 172
Target Start/End: Complemental strand, 10620258 - 10620147
Alignment:
| Q |
61 |
ggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacacca |
160 |
Q |
| |
|
||||||||||||||||| || ||||||||||| || || |||||| | ||||| |||||||||| || || || | || | |||||||||||||| || |
|
|
| T |
10620258 |
ggtctcggaccccaattttcctcatccacagacaaaaccaaaggataatgatccaataatcctctcaactgcgcaatttgtaagcaattaggccacaaca |
10620159 |
T |
|
| Q |
161 |
aacaccattctt |
172 |
Q |
| |
|
||||||| |||| |
|
|
| T |
10620158 |
aacaccactctt |
10620147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 253
Target Start/End: Complemental strand, 21738454 - 21738319
Alignment:
| Q |
118 |
aatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccc |
217 |
Q |
| |
|
||||||||||| || |||||||||| ||||||||||| ||||| |||||| || || | ||| |||| || |||| ||||||||| | ||||||| |
|
|
| T |
21738454 |
aatcctcttaactgagccacctgaagaaaattaggccacctcaaaccccattcctccgaaatcaaaaaccggtctaaccgactcatcgacctaccatccc |
21738355 |
T |
|
| Q |
218 |
ccttataccaagtaaactttctcccacataacggta |
253 |
Q |
| |
|
| || |||||||||| |||| ||||||||||||| |
|
|
| T |
21738354 |
ctttgaaccaagtaaattttcggccacataacggta |
21738319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 2366770 - 2366811
Alignment:
| Q |
9 |
aacaaaatcaaaataaccaggcatatcttgccagcacttcaa |
50 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| |||||||| |
|
|
| T |
2366770 |
aacaaaatcataatagccaggcatatcttgccaacacttcaa |
2366811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 9 - 409
Target Start/End: Original strand, 47421297 - 47421697
Alignment:
| Q |
9 |
aacaaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacag |
108 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||| ||||||| |
|
|
| T |
47421297 |
aacaaaatcatcatagccaggcatatcgtgccaacacttcaacagacgcaccggtctcggaccccaattctcttcatccacagacaaaactataggacag |
47421396 |
T |
|
| Q |
109 |
tgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaac |
208 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||||||||| || |||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
47421397 |
tgatcagataaacctcgtaaatgtgccacctgaatgcagttcggccacaccatacaccattcttcagaaagcaagaacctgtccaatctactcatcgaac |
47421496 |
T |
|
| Q |
209 |
gtccatcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagc |
308 |
Q |
| |
|
| |||||||||||| ||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||| | |
|
|
| T |
47421497 |
gaccatcccccttaaaccaagtaaacttcctcccacataaaggtaaatcaatcaaaaccctatcttcaataaaatcatgaaagggtgcacaatcatccac |
47421596 |
T |
|
| Q |
309 |
cacctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctc |
408 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47421597 |
caactgagaacctctaaccgaacgcctttcttcgactgaccgcacagtgttgaaatccccacaaacacaaaccttgttattccctaaagaaagcaacctc |
47421696 |
T |
|
| Q |
409 |
g |
409 |
Q |
| |
|
| |
|
|
| T |
47421697 |
g |
47421697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 178 - 409
Target Start/End: Original strand, 45716483 - 45716714
Alignment:
| Q |
178 |
agcaagaacctatccaacctactcatcgaacgtccatcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaa |
277 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
45716483 |
agcaagaacctatccaatctactcatcgagcgtccatcccccttaaaccaagtaaacttcctcccacataaaggtaaatcaatcaaaactctatcttcaa |
45716582 |
T |
|
| Q |
278 |
taaaatcattaaaaggtgcacaatcatcagccacctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacaca |
377 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
45716583 |
taaaatcattaaaaggtgcacaatcatccaccaactgagaacctctaaccgaacgcctttcttcgactgaccgcacagtgttgaaatccccgcaaacaca |
45716682 |
T |
|
| Q |
378 |
aacctttttattccctaaagaaagcaacctcg |
409 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
45716683 |
aaccttgttattccctaaagaaagcaacctcg |
45716714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 417
Target Start/End: Original strand, 23240877 - 23241282
Alignment:
| Q |
12 |
aaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtga |
111 |
Q |
| |
|
|||||||| |||||| |||||||||||||| || |||| ||||||| ||||||||| ||||||||||||||||||||||| |||| | ||||| ||| |
|
|
| T |
23240877 |
aaaatcaatataacctggcatatcttgccaacatttcagaagacgcaccggtctcggcccccaattctcttcatccacagacaacaaaatgggacaatga |
23240976 |
T |
|
| Q |
112 |
tcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtc |
211 |
Q |
| |
|
||||||||||||||||| || || ||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||| || | |
|
|
| T |
23240977 |
tcagataatcctcttaactgagctacctgaatgcaattaggccacaccatacaccattctacagaaagcaagaacctatccaacctcctcatcgagcgac |
23241076 |
T |
|
| Q |
212 |
catcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccac |
311 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
23241077 |
catcccccttaaaccaagtaaacttcctcccacttaacagtaaatcaatcaaaactcgatcttcaataaaatcattaaaaggtgtgcaatcatctaccac |
23241176 |
T |
|
| Q |
312 |
ctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcgat |
411 |
Q |
| |
|
||| |||||||||||||||||||||||||| || |||||||| ||||||||||| || |||||||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
23241177 |
ctgggaacccctaaccgaacgcctttcttcaactgaccgcacagtgttaaaatctccacaaacacaaaccttattattacataaagaaagcaacctcgac |
23241276 |
T |
|
| Q |
412 |
gaaagt |
417 |
Q |
| |
|
|||||| |
|
|
| T |
23241277 |
gaaagt |
23241282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 334
Target Start/End: Original strand, 33172164 - 33172476
Alignment:
| Q |
22 |
taaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatc |
121 |
Q |
| |
|
||||||||||| || ||| |||| ||||| | |||| |||||||| |||||||| | |||||| || || || | | |||||| ||||| || | | |
|
|
| T |
33172164 |
taaccaggcatgtcctgctagcatttcaacaaccgcaaaggtctcggcccccaattttgttcatcaactgacaataaaataggacaatgatccgagagcc |
33172263 |
T |
|
| Q |
122 |
ctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccccctt |
221 |
Q |
| |
|
| ||||| || || |||||||| ||||||||||| | | |||||| |||||||||||||| ||||| ||||| | |||||||||||| ||||| || || |
|
|
| T |
33172264 |
cccttaactgagctacctgaatacaattaggccataactgacaccactcttcagagagcaaaaacctgtccaaacgactcatcgaacgcccatctccttt |
33172363 |
T |
|
| Q |
222 |
ataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccacctgagaaccc |
321 |
Q |
| |
|
||||| || ||||||| |||| | |||| |||| ||||| | || ||||||||||||||||| |||||| ||||||| || |||||||| || |
|
|
| T |
33172364 |
gtaccacgtgaactttcgaccacccagaggtaaatcaactaaaacacactcatcaataaaatcattaaacggtgcataatcatctgcaacctgagaccct |
33172463 |
T |
|
| Q |
322 |
ctaaccgaacgcc |
334 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
33172464 |
cgaaccgaacgcc |
33172476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 25855086 - 25854848
Alignment:
| Q |
9 |
aacaaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacag |
108 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| || |||| ||||||| ||| ||||| |||||||| |||||||| || || ||||| | |||| |
|
|
| T |
25855086 |
aacaaaatcattataaccaggcatgtcttgccaacatttcagaagacgcaacggcctcggtccccaattttcttcatctactgacaacacgacctgacaa |
25854987 |
T |
|
| Q |
109 |
tgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaac |
208 |
Q |
| |
|
|||||||| | || | | || || ||||| || |||||||||||||||| |||||| |||| || | |||||| ||||||||||| |||||| | | |
|
|
| T |
25854986 |
tgatcagacagaccccgaagatgagcaacctgcatacaattaggccacaccagacaccaaccttctgacaacaagaatctatccaacctgctcatcaacc |
25854887 |
T |
|
| Q |
209 |
gtccatcccccttataccaagtaaactttctcccacata |
247 |
Q |
| |
|
| |||||||||||| ||||||| || || | |||||||| |
|
|
| T |
25854886 |
gcccatcccccttaaaccaagtgaatttccgcccacata |
25854848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 17603981 - 17603755
Alignment:
| Q |
9 |
aacaaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacag |
108 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||| |||| ||||||| ||| |||| ||| |||| |||||||| || || ||||| | ||||| |
|
|
| T |
17603981 |
aacaaaatcattataaccaggcatgtcttgccagcatttcagaagacgcaacggcctcgt-ccctaattttcttcatctactgacaacacaatcggacaa |
17603883 |
T |
|
| Q |
109 |
tgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaac |
208 |
Q |
| |
|
|||||||| | | ||||| || || ||||| || | ||||||||||| || |||||| |||| || | || ||||||||||||||||||||||||| |
|
|
| T |
17603882 |
tgatcagacagaacccttaaatgagcaacctgcatactattaggccacaacagacaccaaccttctgacaacacaaacctatccaacctactcatcgaac |
17603783 |
T |
|
| Q |
209 |
gtccatcccccttataccaagtaaactt |
236 |
Q |
| |
|
| |||||||||||| ||||||||||||| |
|
|
| T |
17603782 |
gcccatcccccttaaaccaagtaaactt |
17603755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 17555821 - 17555600
Alignment:
| Q |
9 |
aacaaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacag |
108 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| || |||| ||||||| ||| ||||| |||||||| |||||||| || || ||||| | ||||| |
|
|
| T |
17555821 |
aacaaaatcattataaccaggcatgtcttgccaacatttcagaagacgcaacggcctcggtccccaattttcttcatctactgacaacacaaccggacaa |
17555722 |
T |
|
| Q |
109 |
tgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaac |
208 |
Q |
| |
|
|||||||| | || | || || || ||||| || |||||||||||||||| |||||| |||| || | |||||| ||||||||||| |||||||| | |
|
|
| T |
17555721 |
tgatcagacagaccccgtagatgagcaacctgcatacaattaggccacaccagacaccaaccttctgacaacaagaatctatccaacctgctcatcgacc |
17555622 |
T |
|
| Q |
209 |
gtccatcccccttataccaagt |
230 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
17555621 |
acccatcccccttaaaccaagt |
17555600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 18680151 - 18680081
Alignment:
| Q |
145 |
caattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatc |
215 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||||||| ||||| |||| ||||||||| ||||| ||||| |
|
|
| T |
18680151 |
caattaggccataacaaacaccattcttaagagagcaaaaacctgtccagcctactcattgaacgcccatc |
18680081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 70 - 206
Target Start/End: Complemental strand, 9666592 - 9666456
Alignment:
| Q |
70 |
ccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccatt |
169 |
Q |
| |
|
|||||||| || ||||||||||| | ||| || ||||| ||||| || || |||||||| || |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
9666592 |
ccccaattttcctcatccacagacagcaccaacggacaatgatccgacaaacctcttaactgagccacctgaatgcaattaggccacttcaaaccccatt |
9666493 |
T |
|
| Q |
170 |
cttcagagagcaagaacctatccaacctactcatcga |
206 |
Q |
| |
|
| ||||||| ||| |||| ||||| | ||||||||| |
|
|
| T |
9666492 |
cctcagagatcaaaaaccggtccaaacgactcatcga |
9666456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 28398140 - 28398030
Alignment:
| Q |
66 |
cggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacac |
165 |
Q |
| |
|
|||||||||||| ||||||||||| || | | ||||||||||| |||||||| |||| || || || || ||||| ||||| |||||||| || ||| |
|
|
| T |
28398140 |
cggaccccaattttcttcatccaccgacagaatcaaaggacagtggtcagataaacctcgcaaatgagcgacttgaatacaatttggccacactaagcac |
28398041 |
T |
|
| Q |
166 |
cattcttcaga |
176 |
Q |
| |
|
|| |||||||| |
|
|
| T |
28398040 |
cagtcttcaga |
28398030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 206
Target Start/End: Original strand, 39432840 - 39432976
Alignment:
| Q |
70 |
ccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccatt |
169 |
Q |
| |
|
|||||||| || ||||||||||| | ||| || ||||| ||||| || || |||||||| || |||||||||||||||||||||||| ||||| | ||| |
|
|
| T |
39432840 |
ccccaattttcctcatccacagacagcaccaacggacaatgatccgacaaacctcttaactgagccacctgaatgcaattaggccacttcaaaccctatt |
39432939 |
T |
|
| Q |
170 |
cttcagagagcaagaacctatccaacctactcatcga |
206 |
Q |
| |
|
| ||||||| ||| |||| ||||| | ||||||||| |
|
|
| T |
39432940 |
cctcagagatcaaaaaccggtccaaacgactcatcga |
39432976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 214
Target Start/End: Original strand, 9137748 - 9137930
Alignment:
| Q |
32 |
tatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattg |
131 |
Q |
| |
|
|||||||||| || ||||| ||||||| || | ||| ||||||||||| | ||| ||||| ||| | | |||||| ||||||||||| || ||||| || |
|
|
| T |
9137748 |
tatcttgccaacatttcaagagacgcacaggacgcggcccccaattctcattatcaacagacaactcgataggacaatgatcagataaaccccttaaatg |
9137847 |
T |
|
| Q |
132 |
tgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccat |
214 |
Q |
| |
|
|| |||||| ||||| ||||||| || |||||||||| | || |||| ||||| ||||| |||||||||||||| |||| |
|
|
| T |
9137848 |
agcagcctgaacacaatttggccacaacagacaccattctcctgaaagcagaaacctgtccaatctactcatcgaacgaccat |
9137930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 178
Target Start/End: Original strand, 20798186 - 20798294
Alignment:
| Q |
70 |
ccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccatt |
169 |
Q |
| |
|
|||||||| || ||||||| ||| | ||| || ||||| ||||| || || |||||||| || |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
20798186 |
ccccaattttcctcatccaaagacagcaccaacggacaatgatccgacaaacctcttaactgagccacctgaatgcaattaggccacttcaaaccccatt |
20798285 |
T |
|
| Q |
170 |
cttcagaga |
178 |
Q |
| |
|
| ||||||| |
|
|
| T |
20798286 |
cctcagaga |
20798294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 21412851 - 21412909
Alignment:
| Q |
109 |
tgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacacca |
167 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
21412851 |
tgatcatataatcctctcaattgtgccacctgaatacaattcggccacaccaagcacca |
21412909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 22189377 - 22189271
Alignment:
| Q |
61 |
ggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacacca |
160 |
Q |
| |
|
||||| ||||||||||| || ||||| || || || | || ||||| |||||||||||||||| ||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
22189377 |
ggtcttggaccccaattttcctcatcaactgacaaaagcaagggacaatgatcagataatcctcgcaattgagccacctgaatacaattcggccacacca |
22189278 |
T |
|
| Q |
161 |
aacacca |
167 |
Q |
| |
|
| ||||| |
|
|
| T |
22189277 |
agcacca |
22189271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 47620586 - 47620478
Alignment:
| Q |
145 |
caattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatcccccttataccaagtaaactttctcccac |
244 |
Q |
| |
|
||||| ||||||| || |||||||||| | || ||||| || | ||||| |||||||||||||| |||| |||||| ||||||| ||||| | |||| |
|
|
| T |
47620586 |
caatttggccacaacagacaccattctcccgaaagcaaaaatttgtccaatctactcatcgaacgaccattccccttgaaccaagtgaacttccgaccac |
47620487 |
T |
|
| Q |
245 |
ataacggta |
253 |
Q |
| |
|
| ||||||| |
|
|
| T |
47620486 |
acaacggta |
47620478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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