View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_36 (Length: 414)

Name: NF8294A_low_36
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_36
NF8294A_low_36
[»] chr3 (4 HSPs)
chr3 (7-407)||(40966484-40966885)
chr3 (107-154)||(51107679-51107728)
chr3 (107-155)||(28260028-28260078)
chr3 (101-154)||(36473717-36473772)
[»] chr7 (1 HSPs)
chr7 (110-161)||(30218743-30218796)
[»] chr2 (4 HSPs)
chr2 (101-155)||(17642631-17642687)
chr2 (100-153)||(34384083-34384136)
chr2 (106-155)||(24895769-24895820)
chr2 (103-160)||(17642429-17642488)
[»] chr1 (3 HSPs)
chr1 (101-154)||(9117503-9117558)
chr1 (101-133)||(10840514-10840546)
chr1 (101-161)||(27086280-27086342)
[»] chr4 (3 HSPs)
chr4 (101-157)||(38851972-38852030)
chr4 (76-157)||(2478933-2479016)
chr4 (101-154)||(5521535-5521590)
[»] chr8 (1 HSPs)
chr8 (102-160)||(22210266-22210326)
[»] chr5 (1 HSPs)
chr5 (101-134)||(38142395-38142428)


Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 7 - 407
Target Start/End: Original strand, 40966484 - 40966885
Alignment:
Q  7 ataaccttgacattagcatgaatgcaaaccagctattagggacaacaaatgaaactgaaaattttgggaggacgaaaaatatctcgtttgtatgtttaag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40966484 ataaccttgacattagcatgaatgcaaaccagctattagggacaacaaatgaaactgaaaattttgggaggacgaaaaatatctcgtttgtatgtttaag 40966583  T
Q  107 gactaaaatcaaaatttgttatatttttatggacaaaacttatttaaccttaaatttaattatgataggtaataatgtttttgaggggatccttgttggt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40966584 gactaaaatcaaaatttgttatatttttatggacaaaacttatttaaccttaaatttaattatgacaggtaataatgtttttgaggggatccttgttggt 40966683  T
Q  207 tattcagtttgatttaattaaatgcaatcaattttatcagagtaagtgacaagcaaacgggggttaccacttacatcaccatatgtgttgacatgtctct 306  Q
    ||||| |||| ||||||| |||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40966684 tattctgtttaatttaatcaaattcaatccattttatcagattaagtgacaagcaaacgtgggttaccacttacatcaccatatgtgttgacatgtctct 40966783  T
Q  307 cagtttgtgaagtgcttacatgattcagatagttgaccttccttaaacacttagatagtttcgttaattttgttatttgat-atcattatgaacaaacgc 405  Q
    ||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||||| |||||| ||||||||||| ||||||||||||||| ||    
T  40966784 cagtttgtgaaatgtttacatgattcagatagttgaacttccttaaacatttagatagtttctttaattatgttatttgatgatcattatgaacaaatgc 40966883  T
Q  406 at 407  Q
    ||    
T  40966884 at 40966885  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 51107728 - 51107679
Alignment:
Q  107 gactaaaatcaaaatttgttatatttttatggacaa--aacttatttaac 154  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||||||    
T  51107728 gactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 51107679  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 28260028 - 28260078
Alignment:
Q  107 gactaaaatcaaaatttgttatatttttatggac--aaaacttatttaacc 155  Q
    |||||||||||||||||| |||||||||| ||||  |||||||||||||||    
T  28260028 gactaaaatcaaaatttgctatatttttagggacgaaaaacttatttaacc 28260078  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 36473772 - 36473717
Alignment:
Q  101 tttaaggactaaaatcaaaatttgttatatttttatgga--caaaacttatttaac 154  Q
    |||||| |||||||||||||||||||| ||||||| |||   ||||||||||||||    
T  36473772 tttaagaactaaaatcaaaatttgttaaatttttaaggattgaaaacttatttaac 36473717  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 30218796 - 30218743
Alignment:
Q  110 taaaatcaaaatttgttatatttttatggac--aaaacttatttaaccttaaat 161  Q
    ||||||||||||| ||||||||| |||||||  |||||||||||||||||||||    
T  30218796 taaaatcaaaattcgttatatttatatggacgaaaaacttatttaaccttaaat 30218743  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 17642631 - 17642687
Alignment:
Q  101 tttaaggactaaaatcaaaatttgttatatttttatggac--aaaacttatttaacc 155  Q
    |||||||||||||||||||||| | |||||||||| ||||  |||||||||||||||    
T  17642631 tttaaggactaaaatcaaaattcgctatatttttagggacgaaaaacttatttaacc 17642687  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 34384083 - 34384136
Alignment:
Q  100 gtttaaggactaaaatcaaaatttgttatatttttatggacaaaacttatttaa 153  Q
    ||||| |||||||||||||| |||| |||||||||||| || ||||||||||||    
T  34384083 gtttagggactaaaatcaaattttgctatatttttatgaacgaaacttatttaa 34384136  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 24895769 - 24895820
Alignment:
Q  106 ggactaaaatcaaaatttgttatatttttatggac--aaaacttatttaacc 155  Q
    ||||||||||||||||||||||||||| || ||||  |||||||||||||||    
T  24895769 ggactaaaatcaaaatttgttatatttgtaaggacgaaaaacttatttaacc 24895820  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 17642488 - 17642429
Alignment:
Q  103 taaggactaaaatcaaaatttgttatatttttatgga--caaaacttatttaaccttaaa 160  Q
    ||||||||||||||||||| | |||||||| || |||   ||||||||||||||||||||    
T  17642488 taaggactaaaatcaaaatctattatatttatagggatgaaaaacttatttaaccttaaa 17642429  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 9117503 - 9117558
Alignment:
Q  101 tttaaggactaaaatcaaaatttgttatatttttatggac--aaaacttatttaac 154  Q
    |||||| ||||||||||||||||||||||||| || ||||  ||||||||||||||    
T  9117503 tttaagaactaaaatcaaaatttgttatatttatagggacaaaaaacttatttaac 9117558  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 10840514 - 10840546
Alignment:
Q  101 tttaaggactaaaatcaaaatttgttatatttt 133  Q
    |||||||||||||||||||||||||||||||||    
T  10840514 tttaaggactaaaatcaaaatttgttatatttt 10840546  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 27086280 - 27086342
Alignment:
Q  101 tttaaggactaaaatcaaaatttgttatatttttatgga--caaaacttatttaaccttaaat 161  Q
    ||||||||||||||||| |||||||||||||| || |||   ||||||||||||||| |||||    
T  27086280 tttaaggactaaaatcagaatttgttatatttataaggatgaaaaacttatttaaccctaaat 27086342  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 38852030 - 38851972
Alignment:
Q  101 tttaaggactaaaatcaaaatttgttatatttttatggac--aaaacttatttaacctt 157  Q
    |||||||| |||||||||||||| |||||||||||  |||  |||||||||||||||||    
T  38852030 tttaaggattaaaatcaaaatttattatatttttagagacgaaaaacttatttaacctt 38851972  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 2479016 - 2478933
Alignment:
Q  76 ggacgaaaaatatctcgtttgtatgtttaaggactaaaatcaaaatttgttatatttttatggac--aaaacttatttaacctt 157  Q
    |||||||||| ||||| |||  || |||| |||||||||||||||||   ||||||| || ||||  |||||||||||||||||    
T  2479016 ggacgaaaaacatctcattttaatttttagggactaaaatcaaaattaaatatatttatagggacgaaaaacttatttaacctt 2478933  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 5521535 - 5521590
Alignment:
Q  101 tttaaggactaaaatcaaaatttgttatatttttatggac--aaaacttatttaac 154  Q
    |||||||||||||||||||||| | ||||||| || ||||  ||||||||||||||    
T  5521535 tttaaggactaaaatcaaaattcgctatatttatagggacgaaaaacttatttaac 5521590  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 22210266 - 22210326
Alignment:
Q  102 ttaaggactaaaatcaaaatttgttatatttttatgga--caaaacttatttaaccttaaa 160  Q
    ||||||| ||||||||||||| ||||||||| || |||   ||||||||||||||||||||    
T  22210266 ttaaggaataaaatcaaaattcgttatatttataaggatgaaaaacttatttaaccttaaa 22210326  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 134
Target Start/End: Complemental strand, 38142428 - 38142395
Alignment:
Q  101 tttaaggactaaaatcaaaatttgttatattttt 134  Q
    |||||||||||||||||||||||| |||||||||    
T  38142428 tttaaggactaaaatcaaaatttgctatattttt 38142395  T

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