View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_361 (Length: 221)

Name: NF8294A_low_361
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_361
NF8294A_low_361
[»] chr1 (4 HSPs)
chr1 (21-219)||(7386412-7386610)
chr1 (72-199)||(19991215-19991342)
chr1 (116-200)||(19322649-19322733)
chr1 (21-57)||(19322751-19322787)
[»] chr5 (3 HSPs)
chr5 (21-219)||(4925197-4925400)
chr5 (73-219)||(35205797-35205943)
chr5 (82-219)||(35211207-35211344)
[»] chr2 (2 HSPs)
chr2 (128-219)||(39375513-39375604)
chr2 (21-69)||(39375627-39375675)
[»] chr3 (2 HSPs)
chr3 (73-219)||(52314503-52314649)
chr3 (73-219)||(53464913-53465059)
[»] chr4 (2 HSPs)
chr4 (66-219)||(23563558-23563711)
chr4 (94-211)||(48265287-48265404)
[»] chr8 (1 HSPs)
chr8 (107-219)||(40278492-40278604)
[»] chr7 (1 HSPs)
chr7 (103-219)||(45888826-45888942)


Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 7386412 - 7386610
Alignment:
Q  21 tacattatactattaattaaaagaaataaaactcaaagtattaaaaaatctaacaattactggaaaaggaacgtagtaatgaattgctaccatgtatagt 120  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| |||||||||||||||| |    
T  7386412 tacaatatactattaattaaaagaaataaaactcaaagtattacaaaatctgacaattacaggaaaaggaacgtagtaatgcattgctaccatgtataat 7386511  T
Q  121 ttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctct 219  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||  | |||||||||||||||    
T  7386512 ttaactactcaattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgataccacccatatggatgggcgatgtgtatgctct 7386610  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 19991342 - 19991215
Alignment:
Q  72 aacaattactggaaaaggaacgtagtaatgaattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagc 171  Q
    ||||||| | |||||||||| ||||||||  |||  ||||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||||| | |||    
T  19991342 aacaattgcaggaaaaggaaggtagtaatccattattaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatgacacaaaagc 19991243  T
Q  172 attggttagtgtgataccacccatatgg 199  Q
    |||||  |||||||||||||||||||||    
T  19991242 attgggcagtgtgataccacccatatgg 19991215  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 19322733 - 19322649
Alignment:
Q  116 atagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatgga 200  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||||||| ||| | ||||||| ||| ||||||||||||||||    
T  19322733 atagtttaactactcaattctaaagccaattattcatgatattatgacacaagaacgttggttattgtaataccacccatatgga 19322649  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 19322787 - 19322751
Alignment:
Q  21 tacattatactattaattaaaagaaataaaactcaaa 57  Q
    |||| ||||||||||||||||||||||||||||||||    
T  19322787 tacaatatactattaattaaaagaaataaaactcaaa 19322751  T

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Target: chr5 (Bit Score: 117; Significance: 9e-60; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 4925197 - 4925400
Alignment:
Q  21 tacattatactattaattaaaagaaataaaactcaaagtatt-----------aaaaaatctaacaattactggaaaaggaacgtagtaatgaattgcta 109  Q
    |||| |||||||||||||||||||||||| ||||||||||||           | ||||||||||||||||      ||||||||||||||| |||| ||    
T  4925197 tacaatatactattaattaaaagaaataatactcaaagtattctaaaatatgtataaaatctaacaattac------aggaacgtagtaatgcattgtta 4925290  T
Q  110 ccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatg 209  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4925291 ccatgtatagtttaactactcaattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgataccacccatatggacagacgatg 4925390  T
Q  210 tgtatgctct 219  Q
     |||||||||    
T  4925391 cgtatgctct 4925400  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 35205797 - 35205943
Alignment:
Q  73 acaattactggaaaaggaacgtagtaatgaattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagca 172  Q
    |||||| | |||||||||| | ||||||| ||| || ||||| |||||||||| |||||||| ||| |||||||||  ||||| ||||||||| | ||||    
T  35205797 acaattgcaggaaaaggaaggcagtaatgcattacttccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatgacacaaaagca 35205896  T
Q  173 ttggttagtgtgataccacccatatggacagacgatgtgtatgctct 219  Q
    |||| || ||||||||||||||||||  ||| ||||||| |||||||    
T  35205897 ttgggtaatgtgataccacccatatgtgcaggcgatgtgcatgctct 35205943  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 35211344 - 35211207
Alignment:
Q  82 ggaaaaggaacgtagtaatgaattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagt 181  Q
    |||||||||| | ||||||| ||| |||||||| |||||||||| |||||||| ||| |||||||||  ||||| ||||||||| | |||||||| || |    
T  35211344 ggaaaaggaaggcagtaatgcattactaccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatgacacaaaagcattgggtaat 35211245  T
Q  182 gtgataccacccatatggacagacgatgtgtatgctct 219  Q
    |||||||||||||||||  |||  |||||| |||||||    
T  35211244 gtgataccacccatatgtgcaggtgatgtgcatgctct 35211207  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 39375604 - 39375513
Alignment:
Q  128 ctcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctct 219  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||| | |||||||||||||    
T  39375604 ctcaattccaaagccaattatccatgatattatgacacaagagtattggttagtatgataccacccatatggacaggcaatgtgtatgctct 39375513  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 39375675 - 39375627
Alignment:
Q  21 tacattatactattaattaaaagaaataaaactcaaagtattaaaaaat 69  Q
    |||| |||| ||||||||||||||||||||||| ||||||||| |||||    
T  39375675 tacaatatattattaattaaaagaaataaaacttaaagtattacaaaat 39375627  T

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Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 52314503 - 52314649
Alignment:
Q  73 acaattactggaaaaggaacgtagtaatgaattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagca 172  Q
    |||||| | |||||||||| ||||||||| ||| |||||||| ||||||||||||||||||| ||| |||||||||  ||||| ||||||||| | ||||    
T  52314503 acaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatgacacaaaagca 52314602  T
Q  173 ttggttagtgtgataccacccatatggacagacgatgtgtatgctct 219  Q
    ||||  | ||||||||||||||||||  ||| ||||||| |||||||    
T  52314603 ttgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctct 52314649  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 53464913 - 53465059
Alignment:
Q  73 acaattactggaaaaggaacgtagtaatgaattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagca 172  Q
    |||||| | |||||||||| ||||||||| ||| |||||||| ||||||||||||||||||| ||| |||||||||  ||||| ||||||||| | ||||    
T  53464913 acaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatgacacaaaagca 53465012  T
Q  173 ttggttagtgtgataccacccatatggacagacgatgtgtatgctct 219  Q
    ||||  | ||||||||||||||||||  ||| ||||||| |||||||    
T  53465013 ttgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctct 53465059  T

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Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 66 - 219
Target Start/End: Original strand, 23563558 - 23563711
Alignment:
Q  66 aaatctaacaattactggaaaaggaacgtagtaatgaattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacac 165  Q
    |||||| |||||| | |||||||||| ||||||||| ||| | |||||| ||||||||||||||||||| ||| | |||||||| ||||| |||||||||    
T  23563558 aaatctgacaattgcaggaaaaggaaggtagtaatgcattaccaccatggatagtttaactactcaatttcaatgtcaattatccatgatcttatgacac 23563657  T
Q  166 gagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctct 219  Q
     | ||||||||  |||||||||||||||||||   ||| ||||||| |||||||    
T  23563658 aaaagcattgggcagtgtgataccacccatatatgcagccgatgtgcatgctct 23563711  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 48265287 - 48265404
Alignment:
Q  94 tagtaatgaattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccaccc 193  Q
    |||||||| ||| |||||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||||| | ||||||||  |||||||||||||||    
T  48265287 tagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatgacacaaaagcattggacagtgtgataccaccc 48265386  T
Q  194 atatggacagacgatgtg 211  Q
    |||||  ||| |||||||    
T  48265387 atatgtgcaggcgatgtg 48265404  T

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Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 40278604 - 40278492
Alignment:
Q  107 ctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacg 206  Q
    |||||||| ||||||||||||||||||| ||| | |||||||| ||||| ||||||||| | ||||||||  ||||||||||||||||||||  ||| ||    
T  40278604 ctaccatggatagtttaactactcaatttcaatgtcaattatccatgattttatgacacaaaagcattggccagtgtgataccacccatatgtgcaggcg 40278505  T
Q  207 atgtgtatgctct 219  Q
    |||||||||||||    
T  40278504 atgtgtatgctct 40278492  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 45888826 - 45888942
Alignment:
Q  103 attgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggaca 202  Q
    ||||| || ||| ||| |||| |||||||  ||||| |||||||||| | | || |||||||| | ||||||||||| |||  ||||||| || | |||     
T  45888826 attgcaactatggataatttagctactcatatccaatgccaattatccaagttactatgacacaaaagcattggttaatgtattaccacctattttgacc 45888925  T
Q  203 gacgatgtgtatgctct 219  Q
    |||||||||||||||||    
T  45888926 gacgatgtgtatgctct 45888942  T

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