View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8294A_low_372 (Length: 217)
Name: NF8294A_low_372
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_372 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 3067320 - 3067522
Alignment:
| Q |
15 |
attagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaacatcaaggatatatcaaatatcaatgtgccagaata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3067320 |
attagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaacatcaaggatatatcaaatatcaatgtgccagaata |
3067419 |
T |
|
| Q |
115 |
taaacatataataatacatgcagtcttcaatacaagctagaatacattgtacttcaataaaaggctttagatgcgtataatcgttttgatgccaataagt |
214 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3067420 |
taaacaaataataatacatgcagtcttccatacaagctataatacattgtacttcaataaaaggctttagatgcgtataatcgttttgatgccaataagt |
3067519 |
T |
|
| Q |
215 |
gcc |
217 |
Q |
| |
|
||| |
|
|
| T |
3067520 |
gcc |
3067522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 3052618 - 3052679
Alignment:
| Q |
15 |
attagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaa |
78 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
3052618 |
attagagaataaataactattc--tatttatatagtcaagttgttgatatcatatgaaattgaa |
3052679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 6769879 - 6769824
Alignment:
| Q |
16 |
ttagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaa |
73 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||| |
|
|
| T |
6769879 |
ttagagaataaataactattaatta--tatagagtgaagttgttgataacatatgaaa |
6769824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University