View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_386 (Length: 211)

Name: NF8294A_low_386
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_386
NF8294A_low_386
[»] chr2 (19 HSPs)
chr2 (22-192)||(44624828-44624998)
chr2 (42-192)||(44615455-44615605)
chr2 (31-192)||(39153105-39153266)
chr2 (55-192)||(39138692-39138826)
chr2 (31-192)||(39216703-39216864)
chr2 (31-188)||(39387469-39387626)
chr2 (55-188)||(39472763-39472896)
chr2 (31-192)||(39396627-39396788)
chr2 (58-192)||(39371163-39371297)
chr2 (56-192)||(39205742-39205878)
chr2 (58-192)||(39380496-39380630)
chr2 (31-188)||(39196485-39196642)
chr2 (31-188)||(39413004-39413161)
chr2 (63-192)||(44895114-44895243)
chr2 (56-182)||(39478294-39478420)
chr2 (31-190)||(39421161-39421317)
chr2 (56-192)||(39223757-39223893)
chr2 (40-192)||(39188738-39188890)
chr2 (44-192)||(39604362-39604510)
[»] chr8 (3 HSPs)
chr8 (55-192)||(44730161-44730298)
chr8 (33-192)||(45343011-45343170)
chr8 (30-192)||(44949869-44950031)
[»] chr5 (2 HSPs)
chr5 (30-186)||(17060698-17060854)
chr5 (31-188)||(33562339-33562496)
[»] scaffold0283 (1 HSPs)
scaffold0283 (30-192)||(5849-6011)
[»] chr7 (1 HSPs)
chr7 (55-192)||(19808949-19809083)
[»] chr6 (1 HSPs)
chr6 (128-192)||(16114413-16114477)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 44624998 - 44624828
Alignment:
Q  22 cttgtatccagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacc 121  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624998 cttgtatccagcaacagatccaaaaagcttttagacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacc 44624899  T
Q  122 tccaaagaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctct 192  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44624898 tccaaataattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 44624828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 42 - 192
Target Start/End: Complemental strand, 44615605 - 44615455
Alignment:
Q  42 caaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtatt 141  Q
    |||||| ||| | |||||||||||||||||| ||| ||  |||||| |||||||| ||||||||||||||||| ||| |||||||||||||||| |||||    
T  44615605 caaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatt 44615506  T
Q  142 ttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctct 192  Q
    |||||||||||||||||||||||||| |||||||||||| ||||| |||||    
T  44615505 ttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctct 44615455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 39153266 - 39153105
Alignment:
Q  31 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 130  Q
    ||||||| || |||||||||  | ||||||||||| ||| ||| |||||  |||||||||||||||||||| || |||||| || |||||| ||||||||    
T  39153266 agcaacaaatgcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaa 39153167  T
Q  131 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctct 192  Q
    ||||||||||||||||| || ||||||||||| ||| | || || |||||||||||||||||    
T  39153166 ttttcagtattttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttctct 39153105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 39138826 - 39138692
Alignment:
Q  55 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 154  Q
    ||||||||||||||||||||||||| ||||| ||||||  |||||||||| |||||| ||||||||| ||| |||||||||||||||   ||||||||||    
T  39138826 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatt---tttcatgtta 39138730  T
Q  155 gctttcaactcacgcgctagcttcaatgcttcttctct 192  Q
    |||||||  | | | |||||||||||||||||||||||    
T  39138729 gctttcagattaagtgctagcttcaatgcttcttctct 39138692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 39216864 - 39216703
Alignment:
Q  31 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 130  Q
    |||||||||| |||||||||  |  |||||||||||| ||||| |||||  |||||||||||| ||||||| ||  ||||| ||||||||| ||||||||    
T  39216864 agcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaa 39216765  T
Q  131 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctct 192  Q
    |||| |||||||||  ||||||||| |||||| |||   |||||||||||||||||||||||    
T  39216764 tttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctct 39216703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 39387469 - 39387626
Alignment:
Q  31 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 130  Q
    ||||||| || |||||||||  |  ||||||||||| |||||||||  | |||  |||||||| ||||||| ||  ||||| || |||||  ||||||||    
T  39387469 agcaacaaatgcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaa 39387568  T
Q  131 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttctt 188  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  39387569 ttttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgcttctt 39387626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 39472763 - 39472896
Alignment:
Q  55 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 154  Q
    ||||||||||||||||||| ||||| ||||| ||||||| ||||||| || |||||| || |||||  ||||||||||||||||||||||||||||||||    
T  39472763 gacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttctttcatgtta 39472862  T
Q  155 gctttcaactcacgcgctagcttcaatgcttctt 188  Q
     ||||||| ||| | || ||||||||||| ||||    
T  39472863 actttcaaatcaagtgcgagcttcaatgcgtctt 39472896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 31 - 192
Target Start/End: Original strand, 39396627 - 39396788
Alignment:
Q  31 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 130  Q
    |||||| ||| |||||||||  |  |||||||||||||| ||| ||||| ||||||||||||| ||||||| ||| | ||| || |||||| ||||||||    
T  39396627 agcaaccgatgcaaaaagctccaaaacttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaa 39396726  T
Q  131 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctct 192  Q
    ||||||||||||||| | |||| |||| |||| ||| | |||||||||| ||||||||||||    
T  39396727 ttttcagtattttctctaatgtaagctctcaaatcatgtgctagcttcagtgcttcttctct 39396788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 58 - 192
Target Start/End: Complemental strand, 39371297 - 39371163
Alignment:
Q  58 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 157  Q
    |||||||||||||||| |||||  |||||||||| | ||||||| ||||||||| || |||||| |||||| ||||| | |||||||||||||||| |||    
T  39371297 ttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttttactattttctttcatgttggct 39371198  T
Q  158 ttcaactcacgcgctagcttcaatgcttcttctct 192  Q
    ||||  ||| | ||||||||||||||||| |||||    
T  39371197 ttcatatcaagtgctagcttcaatgcttcatctct 39371163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 56 - 192
Target Start/End: Original strand, 39205742 - 39205878
Alignment:
Q  56 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 155  Q
    |||||||||| ||||||| ||  | |||||  |||||||||||||| || |||||| || |||||| ||| |||||||||||||||||||||||| ||||    
T  39205742 acttcatctttatcaaaagaatcaagcaatttataaatcgacaaaagcagtagaaaaccaagaaccgccatagaattttcagtattttctttcatcttag 39205841  T
Q  156 ctttcaactcacgcgctagcttcaatgcttcttctct 192  Q
    ||||||| |||   |||||||||||||||| ||||||    
T  39205842 ctttcaagtcaaatgctagcttcaatgctttttctct 39205878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 58 - 192
Target Start/End: Original strand, 39380496 - 39380630
Alignment:
Q  58 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 157  Q
    |||||||||||| ||| ||||| ||||||||||||| ||||||| || ||||||||| |||||| ||| ||||| ||||||||| ||| | |||| ||||    
T  39380496 ttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtattctctcttatgtaagct 39380595  T
Q  158 ttcaactcacgcgctagcttcaatgcttcttctct 192  Q
    ||||| ||| | |||||| ||| ||||||||||||    
T  39380596 ttcaaatcaagtgctagcgtcagtgcttcttctct 39380630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 39196485 - 39196642
Alignment:
Q  31 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 130  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||||    
T  39196485 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaa 39196584  T
Q  131 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttctt 188  Q
    ||||||||||| || ||||||||||||||||| |||   |||||||||||||||||||    
T  39196585 ttttcagtattgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttctt 39196642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 39413004 - 39413161
Alignment:
Q  31 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 130  Q
    ||||||| || |||||||||  | || |||||||||||| ||| |||||  ||||||| |||  ||||||| ||| ||||| |  |||||| |||||||     
T  39413004 agcaacaaatgcaaaaagctccaagatttcatcttcatccaaaaaagtaaccaatccacaaactgacaaaagcaacagaaaactaagaaccgccaaagag 39413103  T
Q  131 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttctt 188  Q
    ||||| ||||||||||||| |||||||||||| ||| | |||||||||||||||||||    
T  39413104 ttttcggtattttctttcaagttagctttcaaatcaagtgctagcttcaatgcttctt 39413161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 44895114 - 44895243
Alignment:
Q  63 cttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagctttcaa 162  Q
    ||||||| ||| |||||  |||||||||||| ||||||| || |||||| || |||||| |||||||||||||||||||| |||| ||||||||||| ||    
T  44895114 cttcatcgaaagaagtaatcaatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtatttccttttatgttagctttgaa 44895213  T
Q  163 ctcacgcgctagcttcaatgcttcttctct 192  Q
     | | | |||||||||||||||| ||||||    
T  44895214 tttatgtgctagcttcaatgcttgttctct 44895243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 39478294 - 39478420
Alignment:
Q  56 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 155  Q
    |||||| |||| || ||| ||||| ||||||||||||| ||||||| || ||||||  | |||||  || |||||||||||||||||||| | |||| ||    
T  39478294 acttcaccttcttcgaaagaagtaagcaatccataaattgacaaaagcagtagaaaatcaagaactgccgaagaattttcagtattttctctgatgtaag 39478393  T
Q  156 ctttcaactcacgcgctagcttcaatg 182  Q
    ||||||| ||| | |||||||||||||    
T  39478394 ctttcaaatcatgtgctagcttcaatg 39478420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 190
Target Start/End: Original strand, 39421161 - 39421317
Alignment:
Q  31 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 130  Q
    ||||||| || |||||||||  |  |||||||||||||  |||||||||  ||||   ||||| ||||||| || |||||| |||||||||   |||  |    
T  39421161 agcaacaaatgcaaaaagctccaacacttcatcttcattgaaataagtaaccaattggtaaattgacaaaagcagtagaaaaccgagaacc---aaatta 39421257  T
Q  131 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttct 190  Q
    |||||||||||||||| ||| ||||||||||| ||| | || ||||||||||||||||||    
T  39421258 ttttcagtattttcttccatattagctttcaaatcaagagcgagcttcaatgcttcttct 39421317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 39223893 - 39223757
Alignment:
Q  56 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 155  Q
    |||||||||||||||||  ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||| ||||||||||| |||||||||||      
T  39223893 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 39223794  T
Q  156 ctttcaactcacgcgctagcttcaatgcttcttctct 192  Q
    |||| || |||   |||||||||||||||| ||||||    
T  39223793 cttttaaatcatatgctagcttcaatgctttttctct 39223757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 192
Target Start/End: Original strand, 39188738 - 39188890
Alignment:
Q  40 tccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagta 139  Q
    ||||||||||||||  || ||||||||||  ||| ||| |  ||| |||||||| || | ||  | |||||| || |||||| ||||||||||| || ||    
T  39188738 tccaaaaagctttaaaacatcatcttcattgaaagaaggaaccaaaccataaattgatagaaggagtagaaaaccaagaaccaccaaagaatttccatta 39188837  T
Q  140 ttttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctct 192  Q
    |||||||||||||||||||| || ||| | ||||| |||| ||| || |||||    
T  39188838 ttttctttcatgttagcttttaaatcaagtgctagtttcattgcatcctctct 39188890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 192
Target Start/End: Complemental strand, 39604510 - 39604362
Alignment:
Q  44 aaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtatttt 143  Q
    ||||||||||  |||||||||||||| ||| ||| |  |||||||||||| |||| ||  | |||||| || |||||  |||   ||||||| |||||||    
T  39604510 aaaagctttaaaacttcatcttcatcgaaagaaggagccaatccataaattgacacaaggagtagaaaacccagaactgccaccaaattttcggtatttt 39604411  T
Q  144 ctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctct 192  Q
    |  | ||||||| |||||| | | | |||||||||| ||||||||||||    
T  39604410 cacttatgttagatttcaaattaagtgctagcttcattgcttcttctct 39604362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 44730298 - 44730161
Alignment:
Q  55 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 154  Q
    |||||||||| ||||||| |||||| |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  44730298 gacttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaagaattttcagtattttcttttatgtta 44730199  T
Q  155 gctttcaactcacgcgctagcttcaatgcttcttctct 192  Q
    |||||||||||| | ||||||||||| ||||| |||||    
T  44730198 gctttcaactcatgtgctagcttcaaagcttcatctct 44730161  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 33 - 192
Target Start/End: Complemental strand, 45343170 - 45343011
Alignment:
Q  33 caacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaatt 132  Q
    |||||||| |||||||||  | ||||||||||| ||||||| ||||| ||||| ||| ||| |||||||||| |||||| || ||||| | ||| || ||    
T  45343170 caacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgattt 45343071  T
Q  133 ttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctct 192  Q
    |||||||||| |||||| |||||||||||||||| | |||||||| ||||||||||||||    
T  45343070 ttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctct 45343011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 44949869 - 44950031
Alignment:
Q  30 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 129  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||    
T  44949869 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 44949968  T
Q  130 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctct 192  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| ||||| |||||    
T  44949969 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctct 44950031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 186
Target Start/End: Complemental strand, 17060854 - 17060698
Alignment:
Q  30 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 129  Q
    ||||||||||| ||||||| |  | ||||||||||| |||||||||||||  ||||||||||| |||||| ||||| |||||||||||||||||||| ||    
T  17060854 cagcaacagatgcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatga 17060755  T
Q  130 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 186  Q
    || |||||||||| |||| |||||||||||||||||| | ||||||||||| |||||    
T  17060754 atattcagtatttgcttttatgttagctttcaactcatgtgctagcttcaaagcttc 17060698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 33562496 - 33562339
Alignment:
Q  31 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 130  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||| ||    
T  33562496 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaa 33562397  T
Q  131 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttctt 188  Q
      |||||||||||||||||||||||||||||| |||   |||||||||||||||||||    
T  33562396 aattcagtattttctttcatgttagctttcaaatcaaatgctagcttcaatgcttctt 33562339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 5849 - 6011
Alignment:
Q  30 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 129  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||    
T  5849 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 5948  T
Q  130 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctct 192  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| ||||| |||||    
T  5949 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctct 6011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 19809083 - 19808949
Alignment:
Q  55 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 154  Q
    ||||||||||||||||||||||||| ||||| ||||||  ||||||| || |||||| || |||||| ||| ||||||||||||| |   ||||||||||    
T  19809083 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaaccaccagagaattttcagtact---tttcatgtta 19808987  T
Q  155 gctttcaactcacgcgctagcttcaatgcttcttctct 192  Q
    |||||||| ||| | ||||||||||||| |||||||||    
T  19808986 gctttcaaatcaagtgctagcttcaatgtttcttctct 19808949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 16114477 - 16114413
Alignment:
Q  128 gaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctct 192  Q
    ||||||| |||||| ||| |||||| ||||||||| || ||||||||||||||||||| ||||||    
T  16114477 gaatttttagtattctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctttttctct 16114413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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