View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_389 (Length: 210)
Name: NF8294A_low_389
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_389 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 34 - 195
Target Start/End: Complemental strand, 38568518 - 38568357
Alignment:
| Q |
34 |
actgttcttattcaagatgccatgggtgagaaggtatgaattttagagttgaatgtaaaatatgattttggagtaaatggttactttgaatctatgaacc |
133 |
Q |
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| T |
38568518 |
actgttcttattcaagatgccatgggtgagaaggtatgaattttagagttgaatgtaaaatatgattttggagtaaatggttactttgaatctatgaacc |
38568419 |
T |
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| Q |
134 |
acgagcacggacaccaaacacagtacgtcaatactagtagtaatttgaaaaatagaataatt |
195 |
Q |
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| T |
38568418 |
acgagcacggacaccaaacacagtacgtcaatactagtagtaatttgaaaaatagaataatt |
38568357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 38527217 - 38527178
Alignment:
| Q |
34 |
actgttcttattcaagatgccatgggtgagaaggtatgaa |
73 |
Q |
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| T |
38527217 |
actgttcttattcaagatgccatgggtgagaaggtatgaa |
38527178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 51198077 - 51198113
Alignment:
| Q |
34 |
actgttcttattcaagatgccatgggtgagaaggtat |
70 |
Q |
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| T |
51198077 |
actgttcttattcaagatgccatgggtgagaaggtat |
51198113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 29938522 - 29938485
Alignment:
| Q |
33 |
cactgttcttattcaagatgccatgggtgagaaggtat |
70 |
Q |
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| T |
29938522 |
cactgttcttattaaagatgccatgggggagaaggtat |
29938485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 51144422 - 51144458
Alignment:
| Q |
34 |
actgttcttattcaagatgccatgggtgagaaggtat |
70 |
Q |
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|||||||||||| | |||||||||||||||||||||| |
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| T |
51144422 |
actgttcttattaaggatgccatgggtgagaaggtat |
51144458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 49738568 - 49738535
Alignment:
| Q |
37 |
gttcttattcaagatgccatgggtgagaaggtat |
70 |
Q |
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| T |
49738568 |
gttcttattcaagatgccatgggagagaaggtat |
49738535 |
T |
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