View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_398 (Length: 206)
Name: NF8294A_low_398
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_398 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 38299666 - 38299862
Alignment:
| Q |
1 |
tcatggagtggttatgtcaagatattgttttgcctcctcctgacgttgtcgagctttattttgaggatttgtacactgaagagaaactcaatattaaaca |
100 |
Q |
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| T |
38299666 |
tcatggaatggttaagtcaagatattgttttgcctcctcctgacgttgtcgagctttattttgaggatttgtacactgaagagaaactcaatattaaaca |
38299765 |
T |
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| Q |
101 |
acagctggctactattcctaataggatatctttaacttttgatctgtgggaatctaacactgctgagacttatatctgtttgaccgctcatattgtt |
197 |
Q |
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| T |
38299766 |
acagctggctactattcctaataggatatctttaacttttgatctgtgggaatctaacactgctgagacttatatctgtttgaccgctcattttgtt |
38299862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 197
Target Start/End: Original strand, 38305663 - 38305781
Alignment:
| Q |
79 |
aagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatctgtgggaatctaacactgctgagacttatatctg |
178 |
Q |
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| T |
38305663 |
aagagaaactgaagcttaaacaagaattggctaccattcctaataggatatctttaacttttgatttgtgggaatctaacactgctgagacttatatctg |
38305762 |
T |
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| Q |
179 |
tttgaccgctcatattgtt |
197 |
Q |
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|||||| || ||| ||||| |
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| T |
38305763 |
tttgactgcgcattttgtt |
38305781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 38316379 - 38316509
Alignment:
| Q |
67 |
atttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatctgtgggaatctaacactgctga |
166 |
Q |
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| T |
38316379 |
atttgtacacgaaagagaaactaaagcttaaacaagaattggctagcattcctaataggatatctttaacttttgatttgtgggaatctaacaccactga |
38316478 |
T |
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| Q |
167 |
gacttatatctgtttgaccgctcatattgtt |
197 |
Q |
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| T |
38316479 |
gacttatatttgtttgacagctcattttgtt |
38316509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 65 - 191
Target Start/End: Original strand, 38320475 - 38320601
Alignment:
| Q |
65 |
ggatttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatctgtgggaatctaacactgct |
164 |
Q |
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| T |
38320475 |
ggatttgtacacgaaagcgaaactcaagcttaaacaggatttggctaccattcctaataggatatctttaactgttgatctgtgggaatcatgcactacc |
38320574 |
T |
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| Q |
165 |
gagacttatatctgtttgaccgctcat |
191 |
Q |
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| T |
38320575 |
gagacttatatttgtttgaccgctcat |
38320601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 38313023 - 38313094
Alignment:
| Q |
120 |
aataggatatctttaacttttgatctgtgggaatctaacactgctgagacttatatctgtttgaccgctcat |
191 |
Q |
| |
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| T |
38313023 |
aataggatatctttaacttttgatttgtgggaatctaatactactgagacttatatttgtttgactgctcat |
38313094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 38325251 - 38325354
Alignment:
| Q |
94 |
ttaaacaacagctggctactattcctaataggatatctttaacttttgatctgtgggaatctaacactgctgagacttatatctgtttgaccgctcatat |
193 |
Q |
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|||||||||| ||||||| |||||||||||| ||||||||||||||||| ||||||||||| |||| || | |||| || ||| ||||||||||| | |
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| T |
38325251 |
ttaaacaacaattggctaccattcctaatagggtatctttaacttttgatttgtgggaatcttgcactactatgccttacatttgtctgaccgctcattt |
38325350 |
T |
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| Q |
194 |
tgtt |
197 |
Q |
| |
|
|||| |
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|
| T |
38325351 |
tgtt |
38325354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 197
Target Start/End: Original strand, 38308385 - 38308514
Alignment:
| Q |
68 |
tttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatctgtgggaatctaacactgctgag |
167 |
Q |
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||||||||| |||||||||| || | |||||||| |||||||| |||||| ||| |||||||||||| ||||| ||||||||||| ||| ||| |
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| T |
38308385 |
tttgtacacggaagagaaacataagctcaaacaacaactggctaccattccttataagatatctttaacctttgagttgtgggaatcttgtactactggc |
38308484 |
T |
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| Q |
168 |
acttatatctgtttgaccgctcatattgtt |
197 |
Q |
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|||||||| ||||| |||||||| ||||| |
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| T |
38308485 |
acttatatttgtttatccgctcattttgtt |
38308514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 38850966 - 38850836
Alignment:
| Q |
67 |
atttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatctgtgggaatctaacactgctga |
166 |
Q |
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|||||||||| ||||||||| || |||||||||| | |||| ||||||||||||||||||||| |||||||| ||||||||||||||||| |||| |
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| T |
38850966 |
atttgtacacgaaagagaaacctaagcttaaacaacaattaactaccattcctaataggatatctttatcttttgatttgtgggaatctaacactactga |
38850867 |
T |
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| Q |
167 |
gacttatatctgtttgaccgctcatattgtt |
197 |
Q |
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||||||||| |||||||| |||||| ||||| |
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| T |
38850866 |
gacttatatttgtttgactgctcattttgtt |
38850836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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