View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_4 (Length: 558)
Name: NF8294A_low_4
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 28 - 539
Target Start/End: Complemental strand, 29007625 - 29007114
Alignment:
| Q |
28 |
atttccacacacaacactggagaaacagtgatccacctcactgaatcaggaacacgctacttcgtttgtggcagaatgggtcattgtcaacaaggcctca |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007625 |
atttccacacacaacactggagaaacagtgatccacctcactgaatcaggaacacgctacttcgtttgtggcagaatgggtcattgtcaacaaggcctca |
29007526 |
T |
|
| Q |
128 |
aacttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctagttctccaccacgccctcattctcctcctagtccaccgaatgg |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29007525 |
aacttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctagttctgcaccacgccctcattctcctcctagtccaccgaatgg |
29007426 |
T |
|
| Q |
228 |
tgattctcctcctagtccaccacacagtgattctcctcctagtcctccaggtgcacatgctaaagtgccttgtgattgttcttgtgcagatgagggtcgt |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29007425 |
tgattctcctcctagtccaccacacagtgattctcctcctagtcctccagatgcacatgctaaagcgccttgtgattgttcttgtgcagatgagggtcgt |
29007326 |
T |
|
| Q |
328 |
ttgggtgttccattgattacactcgtaatcatccgagctttcgcttggtcttannnnnnngttcacctttcagctatcaactagctagctcacactagac |
427 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29007325 |
ttgggtgttccattgattacactcgtaatcatcttagctttcgcttggtcttctttttttgttcacctttcagctatcaactagctagctcacactagac |
29007226 |
T |
|
| Q |
428 |
agtttatttcactgatgtgggtgtttggtcatttataatgacatattgtttagtacatatagattgtgatttggtttagtgactttagtcaattgttcca |
527 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007225 |
agtttatttcactgatgtgggtgtttggtcattcataatgacatattgtttagtacatatagattgtgatttggtttagtgactttagtcaattgttcca |
29007126 |
T |
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| Q |
528 |
aagtgagtgatg |
539 |
Q |
| |
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|||||||||||| |
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| T |
29007125 |
aagtgagtgatg |
29007114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 21465429 - 21465563
Alignment:
| Q |
87 |
cttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctagt |
186 |
Q |
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||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21465429 |
cttcgtttgtggcagaatgggccattgccaacaaggcctgaaactcaaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctatt |
21465528 |
T |
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| Q |
187 |
tctccaccacgccctcattctcctcctagtccacc |
221 |
Q |
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| T |
21465529 |
tctccaccatgccctcattctcctcctagtccacc |
21465563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 21409594 - 21409776
Alignment:
| Q |
28 |
atttccacacacaacactggagaaacagtgatccacctcactgaatcaggaacacgctacttcgtttgtggcagaatgggtcattgtcaacaaggcctca |
127 |
Q |
| |
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||||| ||| ||||| | |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| | |
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| T |
21409594 |
atttcgacatacaactcaggagaaacagtgatccacgtcattgaatcaggaaaacgctacttcgtttgtggcagaatgggccattgccaacaaggcctga |
21409693 |
T |
|
| Q |
128 |
aacttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctagttctccaccacgccctcattctcctcctagtccacc |
221 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
21409694 |
aactcaaagtcaaagttcaagctcagtccaacaaca-----------cctccacctatttctccaccatgccctcattctcctcctagtccacc |
21409776 |
T |
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