View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_403 (Length: 205)
Name: NF8294A_low_403
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_403 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 4e-46; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 24621223 - 24621328
Alignment:
| Q |
95 |
gtaatctacattcaacaaa-gcatggttgttttgcaccattctagcttatttccatatatcttacacagggagagtgtgactccttgttgttctgcaggt |
193 |
Q |
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| T |
24621223 |
gtaatctacattcaacaaaagcatggttgttttgcaccattctagcttatttccatatatcttacacaaggagagtgtgactccttgttgttctgcaggt |
24621322 |
T |
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| Q |
194 |
tacaat |
199 |
Q |
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|||||| |
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| T |
24621323 |
tacaat |
24621328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 24621063 - 24621112
Alignment:
| Q |
7 |
aagaatatgtcacaagccaagacaatcaaaggcgtatttttataatcaaa |
56 |
Q |
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| T |
24621063 |
aagaaaatgtcacaagccaagacaatcaaaggcgtatttttataatcaaa |
24621112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 47569747 - 47569680
Alignment:
| Q |
95 |
gtaatctacattcaacaaa-gcatggttgttttgcaccattctagcttatttccatatatcttacaca |
161 |
Q |
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| T |
47569747 |
gtaatctacattccacaaaagcatggttcttttgcaccaccctagcttattttcatatatcttacaca |
47569680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 47569908 - 47569859
Alignment:
| Q |
7 |
aagaatatgtcacaagccaagacaatcaaaggcgtatttttataatcaaa |
56 |
Q |
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| T |
47569908 |
aagaaaatgtaacaagccaagacaatcataggcgtatttatataatcaaa |
47569859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 8332023 - 8331955
Alignment:
| Q |
116 |
atggttgttttgcaccattctagcttatttccatatatcttacacagggagagtgtgactccttgttgttct |
187 |
Q |
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| T |
8332023 |
atggttcttttgcaccatcctagcttattttcatatatcttacata---agagtgtgcctccttattgttct |
8331955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 16375802 - 16375735
Alignment:
| Q |
95 |
gtaatctacattcaacaaa-gcatggttgttttgcaccattctagcttatttccatatatcttacaca |
161 |
Q |
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||||||||||| | ||||| |||||||| ||||| ||||| ||| | ||||||||||||||||||||| |
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| T |
16375802 |
gtaatctacataccacaaaagcatggttcttttgtaccatcctaacgtatttccatatatcttacaca |
16375735 |
T |
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