View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_404 (Length: 204)
Name: NF8294A_low_404
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_404 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 2e-72; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 47720849 - 47720704
Alignment:
| Q |
25 |
cagatcaacccaaatgggttaatgttgatgacaattgtttaagcaaccctattaaaactataattggaagcttacttgagtcttggatctcaaatttatc |
124 |
Q |
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| T |
47720849 |
cagatcaacccaaatggattaatgttgatgacaattgtttaagcaaccctattaaaactataattggaagcttacttgagtcttggatctcaaatttatc |
47720750 |
T |
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| Q |
125 |
aggttacattgtaagtgcaagcaacgtccaccttgtcgagcttcat |
170 |
Q |
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| T |
47720749 |
aggttacattgtaagtgcaagtaacgtccaccttgtcgagcttcat |
47720704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 47727841 - 47727696
Alignment:
| Q |
25 |
cagatcaacccaaatgggttaatgttgatgacaattgtttaagcaaccctattaaaactataattggaagcttacttgagtcttggatctcaaatttatc |
124 |
Q |
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| T |
47727841 |
cagatcaacccaaatggattaatgttgatgacaattgtttaagcaaccctattaaaactataattggaagcttacttgagtcttggatctcaaatttatc |
47727742 |
T |
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| Q |
125 |
aggttacattgtaagtgcaagcaacgtccaccttgtcgagcttcat |
170 |
Q |
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| T |
47727741 |
aggttacattgtaagtgcaagtaacgtccaccttgtcgagcttcat |
47727696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 47753729 - 47753589
Alignment:
| Q |
29 |
tcaacccaaatgggttaatgttgatgacaattgtttaagcaaccctattaaaactataattggaagcttacttgagtcttggatctcaaatttatcaggt |
128 |
Q |
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| T |
47753729 |
tcaacctaaatgggttaatatcgatgacaattgtttaagcaaccctattacagctatatttggaggcttactttagtcttggatctcaaatttatcaggt |
47753630 |
T |
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| Q |
129 |
tacattgtaagtgcaagcaacgtccaccttgtcgagcttcat |
170 |
Q |
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| T |
47753629 |
tacattacaagtgccag-tatgttcaccttgtcgagcttcat |
47753589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 47709557 - 47709491
Alignment:
| Q |
104 |
gtcttggatctcaaatttatcaggttacattgtaagtgcaagcaacgtccaccttgtcgagcttcat |
170 |
Q |
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| T |
47709557 |
gtcttggatctcaaatttatcaacttacattgcaggtgcaattaaagtcctccttgttgagcttcat |
47709491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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