View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_412 (Length: 201)
Name: NF8294A_low_412
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_412 |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 44626311 - 44626197
Alignment:
| Q |
17 |
gacatcaacttcctttggtcactattataagtaaaacttcacttttcaagtatac-gaatgattaatttttctggttataatatagactagattcattag |
115 |
Q |
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| T |
44626311 |
gacatctacttcatttggtcactattataagtaaaacttcacttttcaaatatactgaataattaattttt-tggttataatatagactagatacattag |
44626213 |
T |
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| Q |
116 |
ttattcaatgtatctg |
131 |
Q |
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| T |
44626212 |
ttattcaatgtatctg |
44626197 |
T |
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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 170
Target Start/End: Complemental strand, 44626184 - 44626156
Alignment:
| Q |
142 |
ttgattataatagtgaccggagggagtac |
170 |
Q |
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| T |
44626184 |
ttgattataatagtgaccggagggagtac |
44626156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 26982760 - 26982798
Alignment:
| Q |
24 |
acttcctttggtcactattataagtaaaacttcactttt |
62 |
Q |
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| T |
26982760 |
acttccttcggtcactattataagcaaaacttcactttt |
26982798 |
T |
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