View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_45 (Length: 389)
Name: NF8294A_low_45
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 7 - 383
Target Start/End: Complemental strand, 33102463 - 33102087
Alignment:
| Q |
7 |
aagaatatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagctta |
106 |
Q |
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| T |
33102463 |
aagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagctta |
33102364 |
T |
|
| Q |
107 |
gcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccataca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102363 |
gcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccataca |
33102264 |
T |
|
| Q |
207 |
tagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagagaagattgtgatcatccactctaagctaccattagctgtgaaatt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102263 |
tagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagagaagattgtgatcatccactctaagctaccattagctgtgaaatt |
33102164 |
T |
|
| Q |
307 |
agtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgatgaacctatagttcatggcat |
383 |
Q |
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| T |
33102163 |
agtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgatgaacctatagttcatggcat |
33102087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 234
Target Start/End: Complemental strand, 52716731 - 52716522
Alignment:
| Q |
25 |
aagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaa |
124 |
Q |
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|||||||||||| ||||||||||| || || || | |||||||| |||||||||||||||||||| | || ||||| |||||| | | ||| ||||| |
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| T |
52716731 |
aagagaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttctgttataagaagtttagcagctctatattcaaac |
52716632 |
T |
|
| Q |
125 |
agaaacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaa |
224 |
Q |
| |
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| |||||| | | |||||||||||| | || |||||||| |||| ||| |||||||| | || || | ||||||||||||||| | | ||| || | |
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| T |
52716631 |
aaaaacaacataagagtgtaccaaataacactttgaagaacaacaatttgtaccataagatttcctgagaaatcaccatacatagctcttaaaagaggga |
52716532 |
T |
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| Q |
225 |
ttcccataac |
234 |
Q |
| |
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|||||||||| |
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| T |
52716531 |
ttcccataac |
52716522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 52711419 - 52711358
Alignment:
| Q |
29 |
gaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttc |
90 |
Q |
| |
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| T |
52711419 |
gaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttc |
52711358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 41 - 378
Target Start/End: Original strand, 10838653 - 10838990
Alignment:
| Q |
41 |
gaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaag |
140 |
Q |
| |
|
||||| ||||||||||||| || ||||| || ||||| |||||||| ||||| |||| ||||||||||||||| |||||||||||||| | || | || |
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| T |
10838653 |
gaatcgaccttaaaggaaacgatggaagccgcggtttctggaaactgctccatgattaaaagcttagcaccacggtactcaaaaagaaaaagcaaaagag |
10838752 |
T |
|
| Q |
141 |
tgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagt |
240 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||| | | |||| ||||| |||||||||||||| || | | |||||||||||||||||||| |
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|
| T |
10838753 |
tgtaccaaataatacactgaagaaccacaacttgaaccattaagctacctgaataatcaccatacatagcaattaacaaaggaattcccataaccaaagt |
10838852 |
T |
|
| Q |
241 |
gttgggtaatgttgaaagagagaagattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgatt |
340 |
Q |
| |
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||| || | |||||| | || |||||||| |||||||| ||||| | ||||| ||||| ||||| | || |||||| | |||||||||||| |
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|
| T |
10838853 |
gttaggaagtgttgataatgaaaagattgttatcatccattctaaattgccatttttagtgaacaatgtccataatgaaagtgctactagcatgatgatt |
10838952 |
T |
|
| Q |
341 |
ttttgaagtgtatcagctgcgatgaacctatagttcat |
378 |
Q |
| |
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||||||||||| || || || |||||||| ||||||| |
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| T |
10838953 |
ttttgaagtgtgtctgcagctatgaacctgaagttcat |
10838990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 34971234 - 34971055
Alignment:
| Q |
28 |
agaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaaga |
127 |
Q |
| |
|
||||| ||||||||||||||| || || || ||||||||| ||||||| |||||||||||||| | ||| |||| | ||||||| | ||||||||| | | |
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| T |
34971234 |
agaaagaacatcagaatcaactttgaatgatataatagaaccagcagtatcaggaaactgttcaacaatgagaatcctagcacccctatactcaaacaaa |
34971135 |
T |
|
| Q |
128 |
aacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacat |
207 |
Q |
| |
|
||||| | ||| || |||||||||||||| |||||||| || | |||||||||||||||||| |||| ||||||||||| |
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|
| T |
34971134 |
aacaacatcaatgtataccaaatgatacattgaagaacaactatttgaaccataagggtaccagaatcatcaccatacat |
34971055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 243
Target Start/End: Complemental strand, 25038959 - 25038852
Alignment:
| Q |
136 |
caaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataacc |
235 |
Q |
| |
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|||||| |||||||||||||| |||||||| |||| ||| ||||| | |||| ||| ||||||||||||| || | || | ||||||||||||||| |
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| T |
25038959 |
caaagtataccaaatgatacattgaagaacaacaatttgtaccattaaactacctgaaaattcaccatacattcctttaagtaaaggaattcccataacc |
25038860 |
T |
|
| Q |
236 |
aaagtgtt |
243 |
Q |
| |
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|||||||| |
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|
| T |
25038859 |
aaagtgtt |
25038852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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