View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_47 (Length: 385)
Name: NF8294A_low_47
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 309
Target Start/End: Complemental strand, 9283379 - 9283091
Alignment:
| Q |
21 |
caaaatcaccctcatcatctcacaggcacatacatatccatgttatgttcagatgactcaaaaaagagccaataatattacatttgagccggcagtgtga |
120 |
Q |
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| T |
9283379 |
caaaatcaccctcatcatctcacaggcacatacatatccatgttatgttcagatgactcaaaaaagagccattaatattatatttgagccggcagtttga |
9283280 |
T |
|
| Q |
121 |
ggctcattgagaagttggcttgctggttcagcagtagaattaggcatcaccattgaaacaattgtgatcgaagcgtactgatcaaaattgatatcctctt |
220 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||| ||||| |
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| T |
9283279 |
ggctcattgagaagttggcttgctggttcaacaatagaattaggtatcaccattgaaactattgtgatcgaagcgtattggtcaaaattgatatgctctt |
9283180 |
T |
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| Q |
221 |
aggaacatttgctaacttacattcctctgccaaataaaatactcactctaccacttgtgcacatagctcattaatatcttaccataata |
309 |
Q |
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| T |
9283179 |
aggaacatttgctaacttacattcctctgtcaaataaaatgctcactctaccacttgtgcacatagctcattaatatcttaccataata |
9283091 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 22956333 - 22956259
Alignment:
| Q |
261 |
actcactctaccacttgtgcacatagctcattaatatcttaccataatataaggatcttttgcttccaaatactc |
335 |
Q |
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|||| |||||||||||||| ||||||||||||| ||||| |||| || ||||| || | ||||||||||||||| |
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| T |
22956333 |
actcgctctaccacttgtgtgcatagctcattaacatcttgccatgatttaaggttcatgtgcttccaaatactc |
22956259 |
T |
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