View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_55 (Length: 372)
Name: NF8294A_low_55
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_55 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 77 - 352
Target Start/End: Original strand, 5831770 - 5832045
Alignment:
| Q |
77 |
ctcgtgcaatgcatgctgcatactatacacgttattacacaacccttcaacgacgtcgttctgaagtccaatgaggtagagaaggactaaaatgaactga |
176 |
Q |
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| T |
5831770 |
ctcgtgctatgcatgctgcatgctaaacacgttattacacaacccttcaacgacgtcgttctgaagtccaatgaggtagagaaggactaaaatgaactga |
5831869 |
T |
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| Q |
177 |
taccaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcgatattgcataatcc |
276 |
Q |
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| T |
5831870 |
taccaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcgatattgcataatcc |
5831969 |
T |
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| Q |
277 |
attagttcctcaaacgtgccatttttcaccacacaaatctctaatggcccaattgaattatcagcaactcttcctt |
352 |
Q |
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| T |
5831970 |
attagttcctcaaacgtgccatttttcaccacacgaatctctaatggcccaattgaattatcagcaactcttcctt |
5832045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 133 - 352
Target Start/End: Complemental strand, 5824213 - 5823994
Alignment:
| Q |
133 |
cgttctgaagtccaatgaggtagagaaggactaaaatgaactgataccaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggaa |
232 |
Q |
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| T |
5824213 |
cgttctgaagtccaataaggtgcagccgggctaaaatgaaaggaaactaccttagagtcaagaagttccactacaggtgtgagactcacgcacctaggaa |
5824114 |
T |
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| Q |
233 |
ctttatactgattgatacttgcaccacgcgatattgcataatccattagttcctcaaacgtgccatttttcaccacacaaatctctaatggcccaattga |
332 |
Q |
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| T |
5824113 |
ctttatattgattaatcgatgcaccacacgatatataataatccatcaaatcctcgaatgtgccatttttcaccacacgaatctctaatggcccaattga |
5824014 |
T |
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| Q |
333 |
attatcagcaactcttcctt |
352 |
Q |
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| T |
5824013 |
attatcagcaactcttcctt |
5823994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 5824314 - 5824255
Alignment:
| Q |
16 |
aatctaagctcaacagaacttgaaaaataagtttttcaccataagattgacaatgcatgat |
76 |
Q |
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| T |
5824314 |
aatctaagctaaacagaacttgaaaatta-gtttttcaccataagattgacaatgcatgat |
5824255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 344
Target Start/End: Complemental strand, 78944 - 78763
Alignment:
| Q |
163 |
ctaaaatgaactgataccaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcg |
262 |
Q |
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||||| ||||| || |||||||||||||| | ||| |||||||||||||| ||| | || ||||| ||||||||||| ||||| || ||||| | | |
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| T |
78944 |
ctaaagtgaacagagaccaccctagagtccaaaagctccattataggagtaaaattaacacaccttggaactttatattgatttattgaagcacctcttg |
78845 |
T |
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| Q |
263 |
atattgcataatccattagttcctcaaacgtgccatttttcaccacacaaatctctaatggcccaattgaattatcagcaac |
344 |
Q |
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| T |
78844 |
agattgcataatccataagctcctcaaaagttccactcttcacaacccttatctccaatggtccaattgaatgatcagcaac |
78763 |
T |
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