View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_64 (Length: 361)
Name: NF8294A_low_64
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 43921809 - 43921937
Alignment:
| Q |
1 |
gttcaaacttcaaatccctcggagacggtattagtgtaaatttgattaataaaaatctccctcttccccaattaaacaaaaagtgcagcactgagataaa |
100 |
Q |
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| T |
43921809 |
gttcaaacttcaaatccctcggagacggtattagtgtcaatttgattaataaaaatctccctcttccccaattaaacaaaaagtgcagcactgagataaa |
43921908 |
T |
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| Q |
101 |
tcgataatcatgtacaagaatttcgtatt |
129 |
Q |
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| T |
43921909 |
tcgataatcatgtacaagaatttcgtatt |
43921937 |
T |
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Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 174 - 285
Target Start/End: Original strand, 43921985 - 43922096
Alignment:
| Q |
174 |
tagaatcgataagatactagtggtgcaattacggattctagtgcgatcgatgataataagagaggtgaaatgaataaaaaaggagatagaaattgaaacc |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43921985 |
tagaatcgataagatactagtggtgcaattacggattctagtgcgatcgatgataataagagaggtgaaatgaataaaaaaggagatagaaattgaaacc |
43922084 |
T |
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| Q |
274 |
ttgattttcatc |
285 |
Q |
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|||||||||||| |
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| T |
43922085 |
ttgattttcatc |
43922096 |
T |
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