View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_7 (Length: 515)

Name: NF8294A_low_7
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_7
NF8294A_low_7
[»] chr5 (9 HSPs)
chr5 (7-277)||(22426368-22426637)
chr5 (279-340)||(18534134-18534195)
chr5 (279-340)||(22425268-22425328)
chr5 (279-340)||(12031126-12031187)
chr5 (279-340)||(22057098-22057159)
chr5 (439-484)||(22424725-22424770)
chr5 (280-340)||(22052043-22052103)
chr5 (279-340)||(7485595-7485656)
chr5 (282-333)||(18529609-18529660)
[»] chr2 (7 HSPs)
chr2 (7-277)||(41616877-41617147)
chr2 (8-277)||(2620708-2620977)
chr2 (279-340)||(2622044-2622105)
chr2 (279-333)||(37269876-37269930)
chr2 (279-340)||(24339919-24339980)
chr2 (277-340)||(37271290-37271353)
chr2 (294-340)||(41618240-41618286)
[»] chr7 (6 HSPs)
chr7 (7-277)||(4717125-4717392)
chr7 (279-340)||(4718462-4718523)
chr7 (279-340)||(10276497-10276558)
chr7 (280-340)||(15686454-15686514)
chr7 (279-340)||(10277920-10277981)
chr7 (338-372)||(4719005-4719039)
[»] scaffold0025 (2 HSPs)
scaffold0025 (279-341)||(10504-10566)
scaffold0025 (279-340)||(6006-6067)
[»] chr8 (7 HSPs)
chr8 (279-340)||(34758329-34758390)
chr8 (279-340)||(37291875-37291936)
chr8 (279-340)||(6201946-6202007)
chr8 (279-340)||(6203369-6203430)
chr8 (279-340)||(26989707-26989768)
chr8 (279-340)||(37293298-37293359)
chr8 (280-333)||(34759446-34759499)
[»] chr4 (11 HSPs)
chr4 (279-340)||(6634358-6634419)
chr4 (279-340)||(15678211-15678272)
chr4 (279-340)||(31133934-31133995)
chr4 (279-340)||(46002352-46002413)
chr4 (279-333)||(15683843-15683897)
chr4 (279-340)||(10102783-10102844)
chr4 (279-340)||(33237033-33237094)
chr4 (279-340)||(6632935-6632996)
chr4 (279-340)||(15673618-15673679)
chr4 (280-340)||(33242377-33242437)
chr4 (279-333)||(46000936-46000990)
[»] chr3 (3 HSPs)
chr3 (279-340)||(25608512-25608573)
chr3 (279-340)||(10310697-10310758)
chr3 (279-340)||(10315459-10315520)
[»] chr6 (2 HSPs)
chr6 (279-333)||(29624652-29624706)
chr6 (280-340)||(29629109-29629169)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 7 - 277
Target Start/End: Complemental strand, 22426637 - 22426368
Alignment:
Q  7 ctttcttcagatcgactctacatatccttggtatgatgaaattacctcggatcttatctcaaaaccaatgtatctaatcaagattggaatctcaaacaaa 106  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  22426637 ctttcttcagatcgactctacatatcctcggtatgatgaaattacctcggatcttatctcaaa-ccaatgtatcttatcaagattggaatctcaaacaaa 22426539  T
Q  107 gagtatccagtcatgagtagagaaaacactgaacgggaaccagccgtatatgtcaatcaaatgaaaaacatgcatcaaaagatctccaaattgacacaac 206  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |    
T  22426538 gagtatccagtcatgagtagagaaaacaccgaatgggaaccagccgtatatgtcaatcaaatgaaaaacatgcatcaaaagatttccagattgacacagc 22426439  T
Q  207 agataaactatagagtagtctatgaagatggctcaatagtcgcatacagagacttcagcaaaccagcaaaa 277  Q
    |||||||||| |||||||| |||||||||| ||||||||||| ||||||||||| ||| ||||||||||||    
T  22426438 agataaactacagagtagtttatgaagatgcctcaatagtcgtatacagagactccagaaaaccagcaaaa 22426368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 18534134 - 18534195
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||||    
T  18534134 gattttagacaaaagacaagcaacaattgcacaagtaaagtgtaatttaaaatatggaaaaa 18534195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 22425328 - 22425268
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||    
T  22425328 gattttagacaagagacaagcaacaattgtacaaggaaagtgtaa-tttaaatatagaaaaa 22425268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 12031126 - 12031187
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| ||||||||||||||| |||||| |||||||||||| |||||| ||||||    
T  12031126 gattttagacaaaagacaagcaacaattccacaagtaaagtgtaatttaaaatatggaaaaa 12031187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 22057098 - 22057159
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| ||||||||||||||||||| || |||||||||||| |||||| ||||||    
T  22057098 gattttagacaaaagacaagcaacaattgcaccagtaaagtgtaatttaaaatatggaaaaa 22057159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 439 - 484
Target Start/End: Complemental strand, 22424770 - 22424725
Alignment:
Q  439 tggcactttcttattaggccacatagacgacttccccaaaaaagtc 484  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  22424770 tggcactttcttattaggccacatagatgacttccccaaaaaagtc 22424725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 22052103 - 22052043
Alignment:
Q  280 attttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    ||||||||||| |||||||||||||||||||||| ||| |||||||| |||||| ||||||    
T  22052103 attttagacaaaagacaagcaacaattgcacaagtaaactgtaatttaaaatatggaaaaa 22052043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 7485595 - 7485656
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||| ||||||||||| ||| |||||||| |||||| ||||||    
T  7485595 gattttagacaaaagacaagcaaaaattgcacaagtaaaatgtaatttaaaatatggaaaaa 7485656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 333
Target Start/End: Complemental strand, 18529660 - 18529609
Alignment:
Q  282 tttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatat 333  Q
    ||||||||| |||||||||||||||||||||| || ||||||||| ||||||    
T  18529660 tttagacaaaagacaagcaacaattgcacaagtaatgtgtaatttaaaatat 18529609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 41616877 - 41617147
Alignment:
Q  7 ctttcttcagatcgactctacatatccttggtatgatgaaattacctcggatcttatctcaaaaccaatgtatctaatcaagattggaatctcaaacaaa 106  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  41616877 ctttcttcagattgactctacatatccttggtatgatgaagttacctcggatcttatctcaaaaccattatatctaatcaagattggaatctcaaacaaa 41616976  T
Q  107 gagtatccagtcatgagtagagaaaacactgaacgggaaccagccgtatatgtcaatcaaatgaaaaacatgcatcaaaagatctccaaattgacacaac 206  Q
    ||||||||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |    
T  41616977 gagtatccagtcatgagtagagaaagcaccgaatggaaaccagccgtatatgtcaatcaaatgaaaaacatgcatcaaaagatctccagattaacacagc 41617076  T
Q  207 agataaactatagagtagtctatgaagatggctcaatagtcgcatacagagacttcagcaaaccagcaaaa 277  Q
    | |||||||| ||||||||||||||||| | ||||||||| | |||||| |||| ||| ||||||||||||    
T  41617077 aaataaactacagagtagtctatgaagacgcctcaatagttgtatacagcgactccagaaaaccagcaaaa 41617147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 8 - 277
Target Start/End: Original strand, 2620708 - 2620977
Alignment:
Q  8 tttcttcagatcgactctacatatccttggtatgatgaaattacctcggatcttatctcaaaaccaatgtatctaatcaagattggaatctcaaacaaag 107  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||    
T  2620708 tttcttcagattgactctacatatccttggtatgatgaagttacctcggatcttatctcaaaaccattatatctaatcaagatcggaatctcaaacaaag 2620807  T
Q  108 agtatccagtcatgagtagagaaaacactgaacgggaaccagccgtatatgtcaatcaaatgaaaaacatgcatcaaaagatctccaaattgacacaaca 207  Q
     ||||||||||||||||||||||| ||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  2620808 ggtatccagtcatgagtagagaaagcaccgaatggaaaccagccatatatgtcaatcaaatgaaaaacatgcatcaaaagatctccagattaacacaaca 2620907  T
Q  208 gataaactatagagtagtctatgaagatggctcaatagtcgcatacagagacttcagcaaaccagcaaaa 277  Q
     |||||||| ||||||||||||||||| | ||||||||| | |||||  |||| ||| ||||||||||||    
T  2620908 aataaactacagagtagtctatgaagacgcctcaatagttgtatacaacgactccagaaaaccagcaaaa 2620977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 2622044 - 2622105
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| ||||||    
T  2622044 gattttagacaaaagacaagcaacaattgcacaaggaaagcgtaatttaaaatatggaaaaa 2622105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 37269930 - 37269876
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatat 333  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| ||||||    
T  37269930 gattttagacaaaagacaagcaacaattgcacaagtaaagtgtaatttaaaatat 37269876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 24339980 - 24339919
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||| ||||||||||||| |||||||||||| |||||| ||||||    
T  24339980 gattttagacaaaagacaagctacaattgcacaagtaaagtgtaatttaaaatatggaaaaa 24339919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 37271290 - 37271353
Alignment:
Q  277 atgattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||||| |||||||||| ||||||||||| ||| |||||||| |||||| ||||||    
T  37271290 atgattttagacaaaagacaagcaaaaattgcacaagtaaaatgtaatttaaaatatggaaaaa 37271353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 41618240 - 41618286
Alignment:
Q  294 acaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||||||||||||||| |||||||| |||||| ||||||    
T  41618240 acaagcaacaattgcacaaggaaaatgtaatttaaaatatggaaaaa 41618286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 4717125 - 4717392
Alignment:
Q  7 ctttcttcagatcgactctacatatccttggtatgatgaaattacctcggatcttatctcaaaaccaatgtatctaatcaagattggaatctcaaacaaa 106  Q
    ||||||||| || |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4717125 ctttcttcaaattgactctacatatccttg---tgatgaaattacctcggatcttatctcaaaaccaatgtatctaatcaagattggaatctcaaacaaa 4717221  T
Q  107 gagtatccagtcatgagtagagaaaacactgaacgggaaccagccgtatatgtcaatcaaatgaaaaacatgcatcaaaagatctccaaattgacacaac 206  Q
    || |||||||||||||| ||||||| || |||| || |||||||||||||| |||||||||||||||| |||||||||||||| |||| ||||| ||| |    
T  4717222 gactatccagtcatgaggagagaaagcattgaatggaaaccagccgtatatatcaatcaaatgaaaaatatgcatcaaaagatttccagattgatacagc 4717321  T
Q  207 agataaactatagagtagtctatgaagatggctcaatagtcgcatacagagacttcagcaaaccagcaaaa 277  Q
    |||||||||| ||||||||||||||||| | ||||||| ||| |||||  |||| ||| ||||||| ||||    
T  4717322 agataaactacagagtagtctatgaagacgcctcaataatcgtatacatcgactccagaaaaccagaaaaa 4717392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 4718462 - 4718523
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  4718462 gattttagacaaaagacaagcaacaattgcacaaggaaagtgtaatttaaaatatggaaaaa 4718523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 10276558 - 10276497
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||||    
T  10276558 gattttagacaaaagacaagcaacaattgcacaagtaaagtgtaatttaaaatatggaaaaa 10276497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 15686514 - 15686454
Alignment:
Q  280 attttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||||    
T  15686514 attttagacaaaagacaagcaacaattgcacaagtaaagtgtaatttaaaatatggaaaaa 15686454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 10277920 - 10277981
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||| ||||||||||| ||| |||||||| |||||| ||||||    
T  10277920 gattttagacaaaagacaagcaaaaattgcacaagtaaaatgtaatttaaaatatggaaaaa 10277981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 372
Target Start/End: Original strand, 4719005 - 4719039
Alignment:
Q  338 aaactctggtatcagagcaagcatcgatcttggaa 372  Q
    |||||||| ||||||||||||||||||||||||||    
T  4719005 aaactctgatatcagagcaagcatcgatcttggaa 4719039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 10504 - 10566
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaac 341  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| |||||| |||||||    
T  10504 gattttagacaaaagacaagcaacaattgcacaagtaaagtgtaatttaaaatatggaaaaac 10566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 6067 - 6006
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||||    
T  6067 gattttagacaaaagacaagcaacaattgcacaagtaaagtgtaatttaaaatatggaaaaa 6006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 34758390 - 34758329
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||||    
T  34758390 gattttagacaaaagacaagcaacaattgcacaagtaaagtgtaatttaaaatatggaaaaa 34758329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 37291936 - 37291875
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||||    
T  37291936 gattttagacaaaagacaagcaacaattgcacaagtaaagtgtaatttaaaatatggaaaaa 37291875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 6202007 - 6201946
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||||||||||||| | |||||||||||| |||||| ||||||    
T  6202007 gattttagacaaaagacaagcaacaattgcacacgtaaagtgtaatttaaaatatggaaaaa 6201946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 6203369 - 6203430
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||| ||||||||||| ||| |||||||| |||||| ||||||    
T  6203369 gattttagacaaaagacaagcaaaaattgcacaagtaaaatgtaatttaaaatatggaaaaa 6203430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 26989707 - 26989768
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||| |||||||| |||||| |||||||||||| |||||| ||||||    
T  26989707 gattttagacaaaagacaaacaacaattacacaagtaaagtgtaatttaaaatatggaaaaa 26989768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 37293298 - 37293359
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||| ||||||||||| ||| |||||||| |||||| ||||||    
T  37293298 gattttagacaaaagacaagcaaaaattgcacaagtaaaatgtaatttaaaatatggaaaaa 37293359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 34759446 - 34759499
Alignment:
Q  280 attttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatat 333  Q
    ||||||||||| ||||||| || ||||||||||| ||| |||||||| ||||||    
T  34759446 attttagacaaaagacaagaaaaaattgcacaagtaaaatgtaatttaaaatat 34759499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 6634358 - 6634419
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||||    
T  6634358 gattttagacaaaagacaagcaacaattgcacaagtaaagtgtaatttaaaatatggaaaaa 6634419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 15678211 - 15678272
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||||    
T  15678211 gattttagacaaaagacaagcaacaattgcacaagtaaagtgtaatttaaaatatggaaaaa 15678272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 31133934 - 31133995
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||||    
T  31133934 gattttagacaaaagacaagcaacaattgcacaagtaaagtgtaatttaaaatatggaaaaa 31133995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 46002352 - 46002413
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||||    
T  46002352 gattttagacaaaagacaagcaacaattgcacaagtaaagtgtaatttaaaatatggaaaaa 46002413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 15683843 - 15683897
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatat 333  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| ||||||    
T  15683843 gattttagacaaaagacaagcaacaattgcacaagtaaagtgtaatttaaaatat 15683897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 10102844 - 10102783
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| ||||| |||||||||||||||| |||||||||||| |||||| ||||||    
T  10102844 gattttagacaaaagacaggcaacaattgcacaagtaaagtgtaatttaaaatatggaaaaa 10102783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 33237094 - 33237033
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||||| |||||| ||||||    
T  33237094 gattttagacaaaagacaaacaacaattgcacaagtaaagtgtaatttaaaatatggaaaaa 33237033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 6632996 - 6632935
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||| ||||||||||| ||| |||||||| |||||| ||||||    
T  6632996 gattttagacaaaagacaagcaaaaattgcacaagtaaaatgtaatttaaaatatggaaaaa 6632935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 15673679 - 15673618
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||| ||||||||||| ||| |||||||| |||||| ||||||    
T  15673679 gattttagacaaaagacaagcaaaaattgcacaagtaaaatgtaatttaaaatatggaaaaa 15673618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 340
Target Start/End: Original strand, 33242377 - 33242437
Alignment:
Q  280 attttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    ||||||||||| ||||| |||||||||||| ||| ||| |||||||| |||||| ||||||    
T  33242377 attttagacaaaagacaggcaacaattgcaaaagtaaaatgtaatttaaaatatggaaaaa 33242437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 46000990 - 46000936
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatat 333  Q
    |||||||||||| |||||||||| ||||||||||| ||| | |||||| ||||||    
T  46000990 gattttagacaaaagacaagcaaaaattgcacaagtaaactataatttaaaatat 46000936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 25608512 - 25608573
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||||    
T  25608512 gattttagacaaaagacaagcaacaattgcacaagtaaagtgtaatttaaaatatggaaaaa 25608573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 10310758 - 10310697
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||||||||||||| | |||||||||||| |||||| ||||||    
T  10310758 gattttagacaaaagacaagcaacaattgcacacgtaaagtgtaatttaaaatatggaaaaa 10310697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 10315459 - 10315520
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    |||||||||||| |||||||||| ||||||||||| ||| |||||||| |||||| ||||||    
T  10315459 gattttagacaaaagacaagcaaaaattgcacaagtaaaatgtaatttaaaatatggaaaaa 10315520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 29624706 - 29624652
Alignment:
Q  279 gattttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatat 333  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| ||||||    
T  29624706 gattttagacaaaagacaagcaacaattgcacaagtaaagtgtaatttaaaatat 29624652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 340
Target Start/End: Original strand, 29629109 - 29629169
Alignment:
Q  280 attttagacaagagacaagcaacaattgcacaaggaaagtgtaattttaaatatcgaaaaa 340  Q
    ||||||||||| |||||||||| ||||||||||| ||| |||||||| |||||| ||||||    
T  29629109 attttagacaaaagacaagcaaaaattgcacaagtaaaatgtaatttaaaatatggaaaaa 29629169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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