View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8294A_low_76 (Length: 345)
Name: NF8294A_low_76
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_76 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 30 - 339
Target Start/End: Original strand, 38251820 - 38252129
Alignment:
| Q |
30 |
caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccagaaacaaaagaatc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38251820 |
caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc |
38251919 |
T |
|
| Q |
130 |
aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataacacaattaagatttgttacacgctctaaaat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38251920 |
aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaattaagatttgttacacactctaaaat |
38252019 |
T |
|
| Q |
230 |
tatgctagcataaatagaaacgaacaagtgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgt |
329 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38252020 |
tatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgt |
38252119 |
T |
|
| Q |
330 |
atggcagaag |
339 |
Q |
| |
|
|||||||||| |
|
|
| T |
38252120 |
atggcagaag |
38252129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 30 - 339
Target Start/End: Complemental strand, 43157722 - 43157413
Alignment:
| Q |
30 |
caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccagaaacaaaagaatc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43157722 |
caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc |
43157623 |
T |
|
| Q |
130 |
aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataacacaattaagatttgttacacgctctaaaat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43157622 |
aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaattaagatttgttacacactctaaaat |
43157523 |
T |
|
| Q |
230 |
tatgctagcataaatagaaacgaacaagtgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgt |
329 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43157522 |
tatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgt |
43157423 |
T |
|
| Q |
330 |
atggcagaag |
339 |
Q |
| |
|
|||||||||| |
|
|
| T |
43157422 |
atggcagaag |
43157413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 30 - 339
Target Start/End: Complemental strand, 11475146 - 11474837
Alignment:
| Q |
30 |
caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccagaaacaaaagaatc |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11475146 |
caccagattcagtaaaagctcaaactcctataggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc |
11475047 |
T |
|
| Q |
130 |
aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataacacaattaagatttgttacacgctctaaaat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11475046 |
aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaattaagatttgttacacactctaaaat |
11474947 |
T |
|
| Q |
230 |
tatgctagcataaatagaaacgaacaagtgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgt |
329 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11474946 |
tatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgt |
11474847 |
T |
|
| Q |
330 |
atggcagaag |
339 |
Q |
| |
|
|||||||||| |
|
|
| T |
11474846 |
atggcagaag |
11474837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 30 - 339
Target Start/End: Complemental strand, 11503186 - 11502877
Alignment:
| Q |
30 |
caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccagaaacaaaagaatc |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11503186 |
caccagattcagtaaaagctcaaactcctattggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc |
11503087 |
T |
|
| Q |
130 |
aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataacacaattaagatttgttacacgctctaaaat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11503086 |
aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaattaagatttgttacacactctaaaat |
11502987 |
T |
|
| Q |
230 |
tatgctagcataaatagaaacgaacaagtgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgt |
329 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11502986 |
tatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgt |
11502887 |
T |
|
| Q |
330 |
atggcagaag |
339 |
Q |
| |
|
|||||||||| |
|
|
| T |
11502886 |
atggcagaag |
11502877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 28245191 - 28245293
Alignment:
| Q |
237 |
gcataaatagaaacgaacaagtgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcag |
336 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28245191 |
gcataaatagaaacaaacaaatgacagaggctgctataacacaattaggctaacaaaatattgtatattccattcaaaatacaaagtcaatgtatggcag |
28245290 |
T |
|
| Q |
337 |
aag |
339 |
Q |
| |
|
||| |
|
|
| T |
28245291 |
aag |
28245293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 28245195 - 28245237
Alignment:
| Q |
164 |
aaatagaaacgaacaaatgacagaggctactataacacaatta |
206 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
28245195 |
aaatagaaacaaacaaatgacagaggctgctataacacaatta |
28245237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 19306846 - 19306948
Alignment:
| Q |
237 |
gcataaatagaaacgaacaagtgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcag |
336 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19306846 |
gcataaatagaaacgaacaaatgatagaggctgctataacacaattaggctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcag |
19306945 |
T |
|
| Q |
337 |
aag |
339 |
Q |
| |
|
||| |
|
|
| T |
19306946 |
aag |
19306948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 10123418 - 10123520
Alignment:
| Q |
237 |
gcataaatagaaacgaacaagtgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcag |
336 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10123418 |
gcataaatagaaacgaacaaatgatagaggctgctataacacaattaggctaacaaaatattgtatattgcattcaaaatacaaagtcaatgtatggcag |
10123517 |
T |
|
| Q |
337 |
aag |
339 |
Q |
| |
|
||| |
|
|
| T |
10123518 |
aag |
10123520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 10123422 - 10123464
Alignment:
| Q |
164 |
aaatagaaacgaacaaatgacagaggctactataacacaatta |
206 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
10123422 |
aaatagaaacgaacaaatgatagaggctgctataacacaatta |
10123464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 19306850 - 19306892
Alignment:
| Q |
164 |
aaatagaaacgaacaaatgacagaggctactataacacaatta |
206 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
19306850 |
aaatagaaacgaacaaatgatagaggctgctataacacaatta |
19306892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 22490433 - 22490534
Alignment:
| Q |
238 |
cataaatagaaacgaacaagtgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcaga |
337 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22490433 |
cataaatacaaacgaacaaatgacagaggctgctataacacaattaggctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcaga |
22490532 |
T |
|
| Q |
338 |
ag |
339 |
Q |
| |
|
|| |
|
|
| T |
22490533 |
ag |
22490534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 22490436 - 22490478
Alignment:
| Q |
164 |
aaatagaaacgaacaaatgacagaggctactataacacaatta |
206 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22490436 |
aaatacaaacgaacaaatgacagaggctgctataacacaatta |
22490478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 237 - 337
Target Start/End: Complemental strand, 25382994 - 25382894
Alignment:
| Q |
237 |
gcataaatagaaacgaacaagtgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcag |
336 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25382994 |
gcataaatagaatcgaacaaatgacagaggctgctataacacaattaggctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcag |
25382895 |
T |
|
| Q |
337 |
a |
337 |
Q |
| |
|
| |
|
|
| T |
25382894 |
a |
25382894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 25382990 - 25382948
Alignment:
| Q |
164 |
aaatagaaacgaacaaatgacagaggctactataacacaatta |
206 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
25382990 |
aaatagaatcgaacaaatgacagaggctgctataacacaatta |
25382948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 238 - 337
Target Start/End: Complemental strand, 48795572 - 48795473
Alignment:
| Q |
238 |
cataaatagaaacgaacaagtgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcaga |
337 |
Q |
| |
|
||||||||||||||||||| ||||||||| || ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48795572 |
cataaatagaaacgaacaaatgacagaggttgttataacacaattaggctagcacaatattgtatattccattcaaaatacaaagtcaatgtatggcaga |
48795473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 48795569 - 48795527
Alignment:
| Q |
164 |
aaatagaaacgaacaaatgacagaggctactataacacaatta |
206 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
48795569 |
aaatagaaacgaacaaatgacagaggttgttataacacaatta |
48795527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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