View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_85 (Length: 331)
Name: NF8294A_low_85
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_85 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 182 - 313
Target Start/End: Complemental strand, 45037491 - 45037360
Alignment:
| Q |
182 |
aaatttattcacacaatcaataaatcaaaatatgcattccattacttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcagg |
281 |
Q |
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| T |
45037491 |
aaatttattcacacaatcaataaatcaaaatatgcattgcattacttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcagg |
45037392 |
T |
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| Q |
282 |
atgacgccataacatagcaagaacaagattgt |
313 |
Q |
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| T |
45037391 |
gtgacgccataacatagcaagaacaagattgt |
45037360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 290
Target Start/End: Original strand, 45944023 - 45944078
Alignment:
| Q |
235 |
gcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgcca |
290 |
Q |
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| T |
45944023 |
gcacaatagtgaacaacttgaactttctcaagctcaacattctcaggatgacgcca |
45944078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 313
Target Start/End: Complemental strand, 20395365 - 20395277
Alignment:
| Q |
225 |
acttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgt |
313 |
Q |
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| T |
20395365 |
acttaccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcaggatgacgccacaacatggccagcacaagattgt |
20395277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 37686915 - 37686983
Alignment:
| Q |
228 |
taccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacat |
296 |
Q |
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| T |
37686915 |
taccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcagggtgacgccacaacat |
37686983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 37698603 - 37698535
Alignment:
| Q |
228 |
taccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacat |
296 |
Q |
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| T |
37698603 |
taccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcagggtgacgccacaacat |
37698535 |
T |
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