View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_9 (Length: 480)
Name: NF8294A_low_9
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_9 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 7 - 480
Target Start/End: Complemental strand, 50442336 - 50441858
Alignment:
| Q |
7 |
gattgaatatgcttctcaggcaggaattgagcatctgattcttggctcttcaacaaaaactagtttgctcaagtatacatccatttctctaagtaacatc |
106 |
Q |
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| T |
50442336 |
gattgaatatgcttcgcaggcaggaattgagcatctgattcttggctcttcaacaaaaactagtttgctcaagtatacatccatttctctaagtaacatc |
50442237 |
T |
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| Q |
107 |
acattttacaaattttacttctagcttctagttttgtaccgtccatccattctgataattaacatgaaaaataatcaatgtgtaactttagattgcactg |
206 |
Q |
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| T |
50442236 |
acattttacaaattttacttctagcttctagttttgtaccgtccatccattctgataattaacatgaaaaataatcaatatgtaactttagattgcactg |
50442137 |
T |
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| Q |
207 |
tttcaactttatatctccaaacattaataaaagtttaaatttctagcttggttaagagatttttatctgtatgtattcaatttcttaaggaa-----nnn |
301 |
Q |
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| T |
50442136 |
tttcaactttatatcgccaaacattaataaaagtttaaatttctagcttggttaagagatttttatcagtatgtattcaatttcttaaggaatttttttt |
50442037 |
T |
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| Q |
302 |
nnnnnncatatcagaagattcaaggtatcagatattcctggaacagtgtcaaaaggggcaccagatttttgtacagtctatgtcattggcaaaggaaaga |
401 |
Q |
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| T |
50442036 |
ttttttcatatcagaagattcaaggtatcagatattcctggaacagtgtcaaaaggggcaccagatttttgtacagtctatgtcattggcaaaggaaaga |
50441937 |
T |
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| Q |
402 |
ttcaatcgatgcgatctgcttctcgtcctgctccgaacatttcccccctacaagttagtcaaactactatcgaacaaga |
480 |
Q |
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| T |
50441936 |
ttcaatcgatgcgatctgcttctcgtcctgctccgaacatttcccctctacaagttagtcaaactactatcgaacaaga |
50441858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 311 - 476
Target Start/End: Complemental strand, 50421876 - 50421711
Alignment:
| Q |
311 |
atcagaagattcaaggtatcagatattcctggaacagtgtcaaaaggggcaccagatttttgtacagtctatgtcattggcaaaggaaagattcaatcga |
410 |
Q |
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| T |
50421876 |
atcagaagattcaaggtattcgatattcctggaacagtgtcaaaaatggcaccaaatttttgcacagtttatgtcattaataaaggaaagattcaatcga |
50421777 |
T |
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| Q |
411 |
tgcgatctgcttctcgtcctgctccgaacatttcccccctacaagttagtcaaactactatcgaac |
476 |
Q |
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| T |
50421776 |
tgcgatctgcctctcgtcctgctccaaacatttcccctctgcaagttaaccaaactaccatcgaac |
50421711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 50447237 - 50447104
Alignment:
| Q |
7 |
gattgaatatgcttctcaggcaggaattgagcatctgattcttggctcttcaacaaaaactagtttgctcaagtatacatccatttctctaagtaacatc |
106 |
Q |
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| T |
50447237 |
gattgaatatgcttctcaagtaggaattgagcatctgattcttggctcttcagcaaaaactagtttgcacaagtatgcatccattttcctaagtagcatc |
50447138 |
T |
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| Q |
107 |
acattttacaaattttacttctagcttctagttt |
140 |
Q |
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| T |
50447137 |
acattttgcaaattttacttctagcttatagttt |
50447104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 310 - 472
Target Start/End: Complemental strand, 50447019 - 50446857
Alignment:
| Q |
310 |
tatcagaagattcaaggtatcagatattcctggaacagtgtcaaaaggggcaccagatttttgtacagtctatgtcattggcaaaggaaagattcaatcg |
409 |
Q |
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| T |
50447019 |
tatcagaatattcaaggcaacagatatttctggaacggtgtcaaaaggggcaccagatttctgtacagtctatgtcattggcaatggaaagattcaatca |
50446920 |
T |
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| Q |
410 |
atgcgatctgcttctcgtcctgctccgaacatttcccccctacaagttagtcaaactactatc |
472 |
Q |
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| T |
50446919 |
atgcgacctgcttctagttctgttccaaaaatttcccctctacaagccaattaaactactatc |
50446857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 50422104 - 50421965
Alignment:
| Q |
7 |
gattgaatatgcttctcaggcaggaattgagcatctgattcttggctcttcaacaaaaactagtttgctcaagtatacatccatttctctaagtaacatc |
106 |
Q |
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|||||||||||| |||| | | |||||||||||| || |||||||||| ||||||| | ||| |||||| ||||| |||| |||| | |||||| ||| |
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| T |
50422104 |
gattgaatatgcctctcggacgggaattgagcatttggttcttggctcctcaacaagagctaatttgcttgagtatgcatctatttttataagtagcata |
50422005 |
T |
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| Q |
107 |
acattttacaaattttacttctagcttctagttttgtacc |
146 |
Q |
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||| || |||| ||||||| |||||||||||||| |||| |
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| T |
50422004 |
gcatgttgcaaagtttacttttagcttctagttttctacc |
50421965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 310 - 435
Target Start/End: Original strand, 1271152 - 1271277
Alignment:
| Q |
310 |
tatcagaagattcaaggtatcagatattcctggaacagtgtcaaaaggggcaccagatttttgtacagtctatgtcattggcaaaggaaagattcaatcg |
409 |
Q |
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||||||||| |||||||| ||||||||| | |||| | ||||||||||||||||||||||||||||| ||||| |||| |||||||| |||||||| |
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| T |
1271152 |
tatcagaaggttcaaggtggtagatattccagcaacaatatcaaaaggggcaccagatttttgtacagtatatgttgttggtaaaggaaaaattcaatca |
1271251 |
T |
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| Q |
410 |
atgcgatctgcttctcgtcctgctcc |
435 |
Q |
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| T |
1271252 |
atgcgatcagcttctcgtgctgctcc |
1271277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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