View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_98 (Length: 314)
Name: NF8294A_low_98
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_98 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 11 - 314
Target Start/End: Original strand, 42138663 - 42138966
Alignment:
| Q |
11 |
catagatagataaatgaaatgttaaaaaaccatgttaaacttcaacatacttatttctacaaggtaaagacttaggcagcgaagctagcagcagtgatgc |
110 |
Q |
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| T |
42138663 |
catagatagataaatgaaatgttaaaaaaccatgttaaacttcaacatacttatttctacaaggtaaagacttaggcagcgaagctagcagcagtgatgc |
42138762 |
T |
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| Q |
111 |
ctttgctctttcaagattagtctgtttgtgagaccttatatgctctggaattctttttgtgcctatcttctgaagtccaaagaaccgtcccttgtgcaga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42138763 |
ctttgctctttcaagattagtctgtttgtgagaccttatatgctctggaattctttttgtgcctatcttctgaagtccaaagaaccgtcccttgtgcaga |
42138862 |
T |
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| Q |
211 |
ttctgtatcatttacacaacaaaaatttcataggaactcataaacacacaaaataatacaaattaatacaagtgaacaataatgttcatactgcagctaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42138863 |
ttctgtatcatttacacaacaaaaatttcataggaactcataaacacaaaaaataatacaaattaatacaagtgaacaataatgttcatactgcagctaa |
42138962 |
T |
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| Q |
311 |
ctga |
314 |
Q |
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|||| |
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| T |
42138963 |
ctga |
42138966 |
T |
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