View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294_high_3 (Length: 250)
Name: NF8294_high_3
Description: NF8294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 22526734 - 22526498
Alignment:
| Q |
14 |
agaccaagattttcagcttcagaaaggaagtttcaaatatcaagaagaaaatggaagagtacgaccttgccattttcgaacatgaaaaggcgattcaaga |
113 |
Q |
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| T |
22526734 |
agaccaagatttccagcttcagaaaggaagttccaaatttcaagaagaaaatggaagagtacgaccttgccattttcgaacatgaaaaggcaattcaaaa |
22526635 |
T |
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| Q |
114 |
attgaagtcgaacaaaaaatccctcttggaaagatatgaaagtcttaggaaggaagcatatcttaccatcgagaaggtagaagatgtcaagcggcaaaat |
213 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| |||| |||| |
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| T |
22526634 |
attgaagtcgaacaaaaaatccctcttggaaaaatatgaaagtcttaggaaggaagcatatcttaccatcaagaaggtcgaagatgccaaacggctaaat |
22526535 |
T |
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| Q |
214 |
gctgaaatagcaaaattgaccagcgaaggggaccttc |
250 |
Q |
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| T |
22526534 |
gctgaggtagcaaaattgaccagcgaaggggaccttc |
22526498 |
T |
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Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 39 - 228
Target Start/End: Complemental strand, 19754626 - 19754437
Alignment:
| Q |
39 |
ggaagtttcaaatatcaagaagaaaatggaagagtacgaccttgccattttcgaacatgaaaaggcgattcaagaattgaagtcgaacaaaaaatccctc |
138 |
Q |
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||||||| ||||| ||||||||||| |||| ||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
19754626 |
ggaagttccaaatgtcaagaagaaagtggaggagtacgaccttgccatttccgaatatgaaaaggcaattcaagaattgaagtcgaacaagaaatccctt |
19754527 |
T |
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| Q |
139 |
ttggaaagatatgaaagtcttaggaaggaagcatatcttaccatcgagaaggtagaagatgtcaagcggcaaaatgctgaaatagcaaaa |
228 |
Q |
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| T |
19754526 |
ttggaaaaagatgaacggcttaaaaaggaagcaaatcttaccatcaggaaggtcgaagattcaaagcggaaaaatgctgaaatagcaaaa |
19754437 |
T |
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