View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294_low_3 (Length: 283)
Name: NF8294_low_3
Description: NF8294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 29104783 - 29105039
Alignment:
| Q |
14 |
cgaatatcatcttcttccggtgttcctccatcaaaagaacagaaagaagttctggaggatccgacagagaaggattcagcgtctaagcaagcctggttca |
113 |
Q |
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| T |
29104783 |
cgaatatcatcttcttccggtgttcctccatcaaaagaacagaaagaagttctggaggatccgacagagaaggattcagcgtctaagcaggcctggttca |
29104882 |
T |
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| Q |
114 |
tggttaatatctggtaaaactctttttggagcctcttcatagcgatttgcattaggttttgtgcatggatgagtttcggagacgatggttcgagctcgag |
213 |
Q |
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| T |
29104883 |
tggttaatatctggtaaaactctttttggagcctcttcatagcgatttgcattaggttttgagcatggatgagtttcggagacgatggttcgagctcgag |
29104982 |
T |
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| Q |
214 |
taacgagtgcatggctctttgaagttggtgaacgtggtgaatatactgaatggcttc |
270 |
Q |
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| T |
29104983 |
taacgagtgcatggctctttgaagttggttaacgtggtgaatatactgaatggcttc |
29105039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 26 - 271
Target Start/End: Original strand, 29090534 - 29090779
Alignment:
| Q |
26 |
tcttccggtgttcctccatcaaaagaacagaaagaagttctggaggatccgacagagaaggattcagcgtctaagcaagcctggttcatggttaatatct |
125 |
Q |
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| T |
29090534 |
tcttccagtgttccaccatcaaaagaaccgaaagaagtgctaaaggatctgatggagaaggattcagagtctaagtatgcctggttcatggttaagatct |
29090633 |
T |
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| Q |
126 |
ggtaaaactctttttggagcctcttcatagcgatttgcattaggttttgtgcatggatgagtttcggagacgatggttcgagctcgagtaacgagtgcat |
225 |
Q |
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| T |
29090634 |
ggtagaattctttttggagcctcttcatagcaatttgcattaggttttgtgcgtggatgagttctggagacgatggttcgagctcgagtaacgagtgcat |
29090733 |
T |
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| Q |
226 |
ggctctttgaagttggtgaacgtggtgaatatactgaatggcttca |
271 |
Q |
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| T |
29090734 |
ggctctttgaagttggttaacgtggtgaatgtactgaatggcttca |
29090779 |
T |
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