View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294_low_4 (Length: 251)
Name: NF8294_low_4
Description: NF8294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294_low_4 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 251
Target Start/End: Original strand, 340817 - 341062
Alignment:
| Q |
6 |
gtatggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgtttgaa |
105 |
Q |
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| T |
340817 |
gtatggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgtttgaa |
340916 |
T |
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| Q |
106 |
ccttttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttc |
205 |
Q |
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| T |
340917 |
ccttttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttc |
341016 |
T |
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| Q |
206 |
aagagaagataattcacaacaaagttgagaaatcattgattccaat |
251 |
Q |
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| T |
341017 |
aagagaagataattcacaacaaagttgagaaatcattgattccaat |
341062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 336779 - 337021
Alignment:
| Q |
6 |
gtatggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgtttgaa |
105 |
Q |
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||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| ||||||||||| ||| || |
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| T |
336779 |
gtatgctgtaatcacaaacgatccattgaatgttcactacatcatgagcaagaggtttgacaattttgagaaaggtgaaaggtttcgtgaaacgttccaa |
336878 |
T |
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| Q |
106 |
ccttttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttc |
205 |
Q |
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| T |
336879 |
ccttttggtttaggaattttcactacagattcacatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttc |
336978 |
T |
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| Q |
206 |
aagagaagataattcacaacaaagttgagaaatcattgattcc |
248 |
Q |
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| T |
336979 |
aagagaaaatcattcacaacaaagttgagaaatcattgattcc |
337021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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