View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294_low_6 (Length: 240)
Name: NF8294_low_6
Description: NF8294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294_low_6 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 341293 - 341071
Alignment:
| Q |
18 |
atttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactcttccgcttggttaaaagccttctcagatggaactt |
117 |
Q |
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| T |
341293 |
atttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactcttccgcttggttaaaagccttctcagatggaactt |
341194 |
T |
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| Q |
118 |
cggggaaatctgttgaaagacaatttggatcatgtccaagaattatcaaacaaatgttatcaaatgtgaatcgattgaacacatcttgtaaatcgaccac |
217 |
Q |
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| T |
341193 |
cggggaaatctgttgaaagacaatttggatcatgtccaagaattatcaaacaaatgttatcgaatgtgaatcgattgaacacatcttgtaaatcgaccac |
341094 |
T |
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| Q |
218 |
cgaccctttttgttgtagaacat |
240 |
Q |
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| T |
341093 |
cgaccctttttgttgtagaacat |
341071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 337255 - 337033
Alignment:
| Q |
18 |
atttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactcttccgcttggttaaaagccttctcagatggaactt |
117 |
Q |
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| T |
337255 |
atttgaagccaactttgcaacttccaaacacaagccggcacagtgtgtctgtagaagatggattcttcagcttggttaaaagccttctcgcacacaactt |
337156 |
T |
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| Q |
118 |
cggggaaatctgttgaaagacaatttggatcatgtccaagaattatcaaacaaatgttatcaaatgtgaatcgattgaacacatcttgtaaatcgaccac |
217 |
Q |
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| T |
337155 |
cagggaaatcaatggaaagacaattagggtcatgtccaagaattattgaacaaatgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccac |
337056 |
T |
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| Q |
218 |
cgaccctttttgttgtagaacat |
240 |
Q |
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| T |
337055 |
cgacccattttgttgttgaacat |
337033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 332215 - 332119
Alignment:
| Q |
144 |
ggatcatgtccaagaattatcaaacaaatgttatcaaatgtgaatcgattgaacacatcttgtaaatcgaccaccgaccctttttgttgtagaacat |
240 |
Q |
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| T |
332215 |
ggatcatgtccaagaattatcaagcaaatgttatcgaatgtgaagcgattgaatacatcttgtaaatcgaccatcgaccctttttgttgttgaacat |
332119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 347458 - 347676
Alignment:
| Q |
16 |
caatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactcttccgcttggttaaaagccttctcagatggaac |
115 |
Q |
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| T |
347458 |
caatttgaagccatttttgcaacttccaaacacttttaggcactatatgtctatagaatatgcactcttcaatttggttaaaagctttctcacacgcgac |
347557 |
T |
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| Q |
116 |
ttcggggaaatctgttgaaagacaatttggatcatgtccaagaattatcaaacaaatgttatcaaatgtgaatcgattgaacacatcttgtaaatcgacc |
215 |
Q |
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| T |
347558 |
atcgggaaaatcaatcgaaagacaattgggatcacatccaagaactacggaacaaatgttgttgaatgtgaaacgattgaagacatcttgtaaatccacc |
347657 |
T |
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| Q |
216 |
accgaccctttttgttgta |
234 |
Q |
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| T |
347658 |
actgacccttgttgttgta |
347676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 356117 - 356335
Alignment:
| Q |
16 |
caatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactcttccgcttggttaaaagccttctcagatggaac |
115 |
Q |
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||||||||||||| |||||||||||||||||| | ||||| | ||||||||||| ||| |||||| |||||| |||||||||||| | | || |
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| T |
356117 |
caatttgaagccatttttgcaacttccaaacacttttaggcactttatgtctatagaatatgccctcttcgatttggttgaaagccttctcacacgcgac |
356216 |
T |
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| Q |
116 |
ttcggggaaatctgttgaaagacaatttggatcatgtccaagaattatcaaacaaatgttatcaaatgtgaatcgattgaacacatcttgtaaatcgacc |
215 |
Q |
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| T |
356217 |
atcgggaaaatcaatggaaagacaattaggatcacatccaagaaccacggaacaaatgttgtcgaatgtgaaacgattgaagacatcttgtaaatccacc |
356316 |
T |
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| Q |
216 |
accgaccctttttgttgta |
234 |
Q |
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| T |
356317 |
actgagccttgttgttgta |
356335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 333003 - 332912
Alignment:
| Q |
16 |
caatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactcttccgcttggttaaaagccttctca |
107 |
Q |
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||||||||||||| |||||| |||| ||||||||| |||||| ||||||||||||||||| | ||||| ||||||||||||||||||||| |
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| T |
333003 |
caatttgaagccatttttgcatcttctaaacacaaacgggcacgatgtgtctatagaagatgcattcttcagcttggttaaaagccttctca |
332912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 234
Target Start/End: Complemental strand, 376965 - 376820
Alignment:
| Q |
89 |
ttggttaaaagccttctcagatggaacttcggggaaatctgttgaaagacaatttggatcatgtccaagaattatcaaacaaatgttatcaaatgtgaat |
188 |
Q |
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| T |
376965 |
ttggtcaaaagccttctcacaagcaacgtctgggaagtcaatggaaagacagttaggatcgcatccaagaactacagaacaaatgttatcaaatgtgaag |
376866 |
T |
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| Q |
189 |
cgattgaacacatcttgtaaatcgaccaccgaccctttttgttgta |
234 |
Q |
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| T |
376865 |
cgattgaagacatcttgtaaatcaaccactgacccttgttgttgta |
376820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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