View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294_low_7 (Length: 236)

Name: NF8294_low_7
Description: NF8294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294_low_7
NF8294_low_7
[»] scaffold0503 (1 HSPs)
scaffold0503 (15-223)||(11775-11983)
[»] chr3 (35 HSPs)
chr3 (15-223)||(53070798-53071006)
chr3 (15-114)||(18440232-18440331)
chr3 (15-114)||(19485306-19485405)
chr3 (34-165)||(45796785-45796916)
chr3 (15-165)||(49390007-49390153)
chr3 (18-116)||(20630472-20630570)
chr3 (34-156)||(23413630-23413752)
chr3 (18-165)||(1465747-1465891)
chr3 (34-116)||(14497131-14497213)
chr3 (18-116)||(17538032-17538124)
chr3 (18-71)||(5206700-5206753)
chr3 (18-71)||(14507806-14507859)
chr3 (18-71)||(15932551-15932604)
chr3 (18-71)||(17548612-17548665)
chr3 (18-71)||(40806898-40806951)
chr3 (18-71)||(41173416-41173469)
chr3 (18-71)||(43890081-43890134)
chr3 (18-70)||(13031823-13031875)
chr3 (18-116)||(13026671-13026763)
chr3 (18-116)||(22307618-22307710)
chr3 (18-71)||(11886855-11886908)
chr3 (18-71)||(17043998-17044051)
chr3 (18-71)||(17520067-17520120)
chr3 (18-71)||(17534864-17534917)
chr3 (18-71)||(18700771-18700824)
chr3 (18-71)||(30175611-30175664)
chr3 (18-71)||(40811713-40811766)
chr3 (18-71)||(8898876-8898930)
chr3 (85-165)||(12269285-12269362)
chr3 (18-71)||(21618272-21618326)
chr3 (146-223)||(22110453-22110530)
chr3 (18-71)||(24153448-24153502)
chr3 (18-71)||(36166378-36166432)
chr3 (18-71)||(5214820-5214873)
chr3 (18-71)||(22307699-22307752)
[»] chr4 (18 HSPs)
chr4 (15-215)||(6190274-6190474)
chr4 (55-223)||(21815730-21815898)
chr4 (34-165)||(3514829-3514960)
chr4 (15-137)||(21815865-21815987)
chr4 (34-165)||(15869083-15869214)
chr4 (34-165)||(32850999-32851130)
chr4 (18-165)||(13844243-13844387)
chr4 (18-125)||(19857222-19857329)
chr4 (18-165)||(15098989-15099133)
chr4 (18-165)||(361895-362039)
chr4 (18-71)||(44102076-44102130)
chr4 (18-71)||(10357578-10357631)
chr4 (18-71)||(35812534-35812587)
chr4 (18-71)||(18215602-18215655)
chr4 (18-71)||(52312292-52312346)
chr4 (18-71)||(10357494-10357547)
chr4 (18-71)||(19609182-19609235)
chr4 (85-114)||(46642598-46642627)
[»] scaffold0034 (1 HSPs)
scaffold0034 (15-223)||(51984-52192)
[»] chr6 (15 HSPs)
chr6 (15-223)||(18456517-18456736)
chr6 (15-223)||(18461677-18461896)
chr6 (61-223)||(18821945-18822108)
chr6 (15-137)||(18822081-18822203)
chr6 (18-165)||(25956958-25957102)
chr6 (18-103)||(18319535-18319620)
chr6 (34-125)||(27850833-27850924)
chr6 (18-71)||(17742991-17743044)
chr6 (15-71)||(23017252-23017308)
chr6 (18-71)||(1595331-1595385)
chr6 (18-71)||(16133733-16133786)
chr6 (18-71)||(18708402-18708455)
chr6 (18-71)||(19444343-19444396)
chr6 (18-53)||(27573394-27573429)
chr6 (18-53)||(31733650-31733685)
[»] scaffold0056 (1 HSPs)
scaffold0056 (15-223)||(79429-79637)
[»] chr2 (18 HSPs)
chr2 (15-215)||(32452038-32452238)
chr2 (18-71)||(9974827-9974880)
chr2 (18-71)||(19202301-19202354)
chr2 (18-71)||(22689582-22689635)
chr2 (18-71)||(22694178-22694231)
chr2 (18-71)||(24435955-24436008)
chr2 (19-71)||(5032461-5032513)
chr2 (18-71)||(6478347-6478400)
chr2 (18-71)||(24781960-24782013)
chr2 (18-116)||(356940-357032)
chr2 (22-69)||(6576142-6576189)
chr2 (18-71)||(23712339-23712393)
chr2 (18-71)||(21316810-21316863)
chr2 (146-223)||(22413239-22413315)
chr2 (18-71)||(23969645-23969698)
chr2 (18-71)||(24782002-24782055)
chr2 (18-71)||(24883364-24883417)
chr2 (80-116)||(7672482-7672518)
[»] chr8 (18 HSPs)
chr8 (33-223)||(19801526-19801716)
chr8 (18-165)||(38550328-38550472)
chr8 (15-165)||(39833623-39833769)
chr8 (18-165)||(20982962-20983106)
chr8 (18-165)||(27472625-27472769)
chr8 (18-114)||(13428427-13428523)
chr8 (18-116)||(1323458-1323558)
chr8 (15-71)||(19801719-19801775)
chr8 (18-71)||(24713123-24713176)
chr8 (18-71)||(39937107-39937160)
chr8 (18-71)||(18833230-18833283)
chr8 (18-71)||(19127893-19127946)
chr8 (85-116)||(24713207-24713238)
chr8 (18-71)||(15203557-15203611)
chr8 (19-116)||(19127936-19128027)
chr8 (18-71)||(26225575-26225629)
chr8 (18-71)||(45291022-45291076)
chr8 (18-59)||(18760332-18760373)
[»] chr7 (29 HSPs)
chr7 (61-223)||(12756816-12756978)
chr7 (18-165)||(37727874-37728018)
chr7 (18-165)||(9390033-9390177)
chr7 (18-165)||(17232269-17232413)
chr7 (15-165)||(6170439-6170586)
chr7 (20-165)||(45847960-45848102)
chr7 (18-98)||(14270435-14270515)
chr7 (34-97)||(1543467-1543530)
chr7 (18-76)||(8468133-8468191)
chr7 (18-71)||(8852262-8852315)
chr7 (18-71)||(38227286-38227339)
chr7 (18-70)||(11066328-11066380)
chr7 (19-71)||(32300904-32300956)
chr7 (18-71)||(12371204-12371257)
chr7 (18-71)||(12371246-12371299)
chr7 (18-71)||(13150675-13150728)
chr7 (18-71)||(20619145-20619198)
chr7 (18-71)||(20619187-20619240)
chr7 (18-71)||(44116333-44116387)
chr7 (18-71)||(48273172-48273226)
chr7 (18-71)||(61516-61569)
chr7 (18-71)||(13150633-13150686)
chr7 (18-71)||(14183721-14183774)
chr7 (26-71)||(18075582-18075627)
chr7 (18-71)||(18875946-18875999)
chr7 (18-70)||(20110336-20110389)
chr7 (18-71)||(36686297-36686350)
chr7 (18-71)||(48811739-48811792)
chr7 (105-137)||(1543476-1543508)
[»] scaffold0031 (2 HSPs)
scaffold0031 (55-223)||(20523-20691)
scaffold0031 (15-137)||(20658-20780)
[»] scaffold0716 (1 HSPs)
scaffold0716 (34-165)||(4516-4647)
[»] scaffold0075 (2 HSPs)
scaffold0075 (34-165)||(8669-8800)
scaffold0075 (18-71)||(52250-52304)
[»] scaffold0192 (2 HSPs)
scaffold0192 (34-136)||(9701-9803)
scaffold0192 (104-137)||(9722-9755)
[»] chr1 (22 HSPs)
chr1 (18-165)||(43542758-43542902)
chr1 (15-165)||(28194786-28194933)
chr1 (18-165)||(41305924-41306068)
chr1 (15-164)||(20636542-20636688)
chr1 (18-165)||(35982016-35982160)
chr1 (19-114)||(43697015-43697110)
chr1 (18-114)||(46382940-46383036)
chr1 (18-71)||(431541-431594)
chr1 (20-71)||(35088379-35088430)
chr1 (146-223)||(16368387-16368463)
chr1 (18-71)||(41227790-41227843)
chr1 (146-223)||(50686555-50686631)
chr1 (18-70)||(20587632-20587684)
chr1 (18-70)||(20592170-20592222)
chr1 (85-116)||(35088503-35088534)
chr1 (18-53)||(48300765-48300800)
chr1 (18-71)||(13528855-13528908)
chr1 (18-71)||(20316210-20316263)
chr1 (22-71)||(20634671-20634720)
chr1 (18-71)||(23967551-23967604)
chr1 (15-71)||(40388972-40389029)
chr1 (191-223)||(41050137-41050169)
[»] scaffold0235 (2 HSPs)
scaffold0235 (34-165)||(13180-13311)
scaffold0235 (34-165)||(24882-25012)
[»] scaffold0098 (1 HSPs)
scaffold0098 (34-165)||(34767-34898)
[»] chr5 (8 HSPs)
chr5 (15-165)||(5889496-5889643)
chr5 (15-170)||(21741873-21742025)
chr5 (15-79)||(29915436-29915500)
chr5 (18-71)||(21309063-21309116)
chr5 (18-53)||(19920617-19920652)
chr5 (18-71)||(14047903-14047957)
chr5 (18-71)||(20918273-20918327)
chr5 (18-71)||(32027175-32027229)
[»] scaffold0116 (1 HSPs)
scaffold0116 (18-165)||(44121-44265)
[»] scaffold0810 (1 HSPs)
scaffold0810 (18-125)||(2685-2792)
[»] scaffold1792 (1 HSPs)
scaffold1792 (18-165)||(36-179)
[»] scaffold0230 (2 HSPs)
scaffold0230 (18-165)||(20790-20934)
scaffold0230 (18-165)||(23721-23864)
[»] scaffold0029 (1 HSPs)
scaffold0029 (34-165)||(74469-74600)
[»] scaffold0035 (1 HSPs)
scaffold0035 (18-165)||(106205-106349)
[»] scaffold0045 (1 HSPs)
scaffold0045 (34-125)||(47049-47140)
[»] scaffold0064 (1 HSPs)
scaffold0064 (18-71)||(57702-57755)
[»] scaffold0047 (1 HSPs)
scaffold0047 (18-71)||(77988-78041)
[»] scaffold0036 (1 HSPs)
scaffold0036 (18-71)||(78449-78502)
[»] scaffold0737 (3 HSPs)
scaffold0737 (18-70)||(6786-6838)
scaffold0737 (18-71)||(6701-6754)
scaffold0737 (191-223)||(1899-1931)
[»] scaffold0853 (1 HSPs)
scaffold0853 (18-71)||(2936-2989)
[»] scaffold0507 (1 HSPs)
scaffold0507 (18-67)||(3025-3074)
[»] scaffold0375 (2 HSPs)
scaffold0375 (18-71)||(9399-9452)
scaffold0375 (18-71)||(9441-9494)
[»] scaffold0371 (1 HSPs)
scaffold0371 (18-71)||(2785-2838)
[»] scaffold0188 (1 HSPs)
scaffold0188 (18-71)||(698-751)
[»] scaffold0117 (1 HSPs)
scaffold0117 (18-71)||(41286-41339)
[»] scaffold0111 (3 HSPs)
scaffold0111 (18-71)||(7216-7269)
scaffold0111 (18-71)||(14335-14388)
scaffold0111 (18-71)||(14400-14453)
[»] scaffold0450 (1 HSPs)
scaffold0450 (19-71)||(13586-13638)
[»] scaffold0010 (1 HSPs)
scaffold0010 (159-223)||(60817-60880)
[»] scaffold1351 (1 HSPs)
scaffold1351 (85-116)||(1402-1433)
[»] scaffold0509 (1 HSPs)
scaffold0509 (18-53)||(9915-9950)
[»] scaffold0001 (1 HSPs)
scaffold0001 (85-116)||(76737-76768)
[»] scaffold0134 (1 HSPs)
scaffold0134 (85-119)||(10258-10292)
[»] scaffold0106 (1 HSPs)
scaffold0106 (18-71)||(15478-15532)
[»] scaffold1633 (1 HSPs)
scaffold1633 (18-71)||(156-209)
[»] scaffold1403 (1 HSPs)
scaffold1403 (146-223)||(494-570)
[»] scaffold0080 (1 HSPs)
scaffold0080 (18-71)||(59650-59703)
[»] scaffold0061 (1 HSPs)
scaffold0061 (18-71)||(19516-19569)


Alignment Details
Target: scaffold0503 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 11775 - 11983
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  11775 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagcatcaagccctctaccatcgcgtattatgtataaatatacattacagagaatcaa 11874  T
Q  115 gctctctcccatctcgtattatgcgtatgcaatggactcaacttcttaacattttagaacatcgacttcttaatgcaaatccaataaattggaacatcat 214  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11875 gctctctcccatctcgtattatgcatatgcaatggactcaacttcttaacattttagaacatcgacttcttaatacaaatccaataaattggaacatcat 11974  T
Q  215 ccttcatct 223  Q
    |||||||||    
T  11975 ccttcatct 11983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 53071006 - 53070798
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    ||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53071006 ggacatcaagccctcatcgtattgagcgtaaataggctctcacagcatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 53070907  T
Q  115 gctctctcccatctcgtattatgcgtatgcaatggactcaacttcttaacattttagaacatcgacttcttaatgcaaatccaataaattggaacatcat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  53070906 gctctctcccatctcgtattatgcgtatgcaatggactcaacttcttaacattttagaacatcgacttcttaatacaaatccaataaattgaaacatcat 53070807  T
Q  215 ccttcatct 223  Q
    |||||||||    
T  53070806 ccttcatct 53070798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 18440331 - 18440232
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    |||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| || |  ||||||||||||||||||||||||||||||||    
T  18440331 ggacatcaagcccccaacgtattgagcgtaaataggctcacagagcatcaagccctctcccttcacaaattatgtataaatatacattacagagcatcaa 18440232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 19485405 - 19485306
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    |||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| || |  ||||||||||||||||||||||||||||||||    
T  19485405 ggacatcaagcccccaacgtattgagcgtaaataggctcacagagcatcaagccctctcccttcacaaattatgtataaatatacattacagagcatcaa 19485306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 45796785 - 45796916
Alignment:
Q  34 tattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctcccatctcgtat 133  Q
    |||||||||||||||||||| ||||| |||||||||||||||||| |  ||| |||||||||||||||||||||||||||||| ||| ||||||||  ||    
T  45796785 tattgagcgtaaataggctcccagagcatcaagccctctcccatctcagattgtgtataaatatacattacagagcatcaagccctcccccatctcagat 45796884  T
Q  134 tatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||||  ||||||||||||| ||| || |||||    
T  45796885 tatgaatatgcaatggacttaacatcctaaca 45796916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 49390153 - 49390007
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    |||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| || || | |||||||||||||||||||||||||||||||||    
T  49390153 ggacatcaagccccaa-cgtattgagcgtaaataggctctcagagcatcaagccctctaccttcacatattatgtataaatatacattacagagcatcaa 49390055  T
Q  115 gctctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| || ||||   ||||  ||| |||||||||| ||||||| ||||||||    
T  49390054 gctgtcaccca--acgta-aatgagtatgcaatgaactcaacatcttaaca 49390007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 20630570 - 20630472
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagc 116  Q
    ||||||||||||| | |||||||||||||||||||| ||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||||    
T  20630570 catcaagcccccaacatattgagcgtaaataggctcacagagcatcaagccctctcccttcacatattatgtataaatatacattacagagcatcaagc 20630472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 34 - 156
Target Start/End: Complemental strand, 23413752 - 23413630
Alignment:
Q  34 tattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctcccatctcgtat 133  Q
    ||||||||||||||||||||  |||| |||||||||||||||||| |  ||| ||||||||||||||||| |||||||||||| ||| ||||||||  ||    
T  23413752 tattgagcgtaaataggctcctagagcatcaagccctctcccatctcagattgtgtataaatatacattatagagcatcaagccctcccccatctcagat 23413653  T
Q  134 tatgcgtatgcaatggactcaac 156  Q
    ||||  |||||||||||||||||    
T  23413652 tatgaatatgcaatggactcaac 23413630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 1465891 - 1465747
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    ||||||||||||| | |||||||| ||||||||||| ||||| ||||| | ||||||| || | |||||||| ||||||||||||||||||||||||||     
T  1465891 catcaagcccccaacttattgagcttaaataggctcacagagcatcaatctctctcccttcacatattatgtttaaatatacattacagagcatcaagcc 1465792  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| ||||   ||||  ||| |||||||||||||||||| ||||||||    
T  1465791 ctcaccca--acgta-aatgagtatgcaatggactcaacatcttaaca 1465747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 14497131 - 14497213
Alignment:
Q  34 tattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagc 116  Q
    |||||||||||||||||||| ||||| |||||||||||||| ||| |  ||| |||||||||||||||||||||| |||||||    
T  14497131 tattgagcgtaaataggctcccagagcatcaagccctctcctatctcagattgtgtataaatatacattacagagtatcaagc 14497213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 17538032 - 17538124
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagc 116  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||        | || |||||||||||||||||||||| |||||||||    
T  17538032 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagccctc------aacataatatgtataaatatacattacagggcatcaagc 17538124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 5206753 - 5206700
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||||||||||||||||||||||||||||| ||| | ||||| |||||    
T  5206753 catcaagcccccatcgtattgagcgtaaataggctcacagggcatcaaaccctc 5206700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 14507806 - 14507859
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  14507806 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagccctc 14507859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 15932604 - 15932551
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  15932604 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagccctc 15932551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 17548665 - 17548612
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  17548665 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagccctc 17548612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 40806898 - 40806951
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  40806898 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagccctc 40806951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 41173469 - 41173416
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  41173469 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagccctc 41173416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 43890134 - 43890081
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  43890134 catcaagcccccaacgtattgagcgtaaataggctcccagggcatcaagccctc 43890081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 13031875 - 13031823
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccct 70  Q
    ||||||||||||| |||||||||||||||||||||| ||| | ||||||||||    
T  13031875 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagccct 13031823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 13026763 - 13026671
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagc 116  Q
    ||||||||||||| |||||||||||||||||||||| ||  | |||||||||||        | || |||||||||||||||||||||| |||||||||    
T  13026763 catcaagcccccaacgtattgagcgtaaataggctcacaaggcatcaagccctc------aacataatatgtataaatatacattacagggcatcaagc 13026671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 22307710 - 22307618
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagc 116  Q
    |||||||||| || |||||||||||||||||||||| ||| | |||||||||||        | || |||||||||||||||||||||| |||||||||    
T  22307710 catcaagccctcaacgtattgagcgtaaataggctcacagggcatcaagccctc------aacataatatgtataaatatacattacagggcatcaagc 22307618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 11886908 - 11886855
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| | |||||||||||||||||||| || || |||||||||||    
T  11886908 catcaagcccccaacatattgagcgtaaataggctcacatagcatcaagccctc 11886855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 17043998 - 17044051
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | ||||| |||||    
T  17043998 catcaagcccccaacgtattgagcgtaaataggctcacagggaatcaaaccctc 17044051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 17520120 - 17520067
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | ||||| |||||    
T  17520120 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaaaccctc 17520067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 17534917 - 17534864
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | ||||| |||||    
T  17534917 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaaaccctc 17534864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 18700824 - 18700771
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||| ||||    
T  18700824 catcaagcccccaacgtattgagcgtaaataggctcccagggcatcaagacctc 18700771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 30175664 - 30175611
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | ||||| |||||    
T  30175664 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaaaccctc 30175611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 40811713 - 40811766
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | ||||| |||||    
T  40811713 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaaaccctc 40811766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 8898876 - 8898930
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | |||||||||||    
T  8898876 catcaagcccccaacgtatttgagcgtaaataggctcccagggcatcaagccctc 8898930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 12269285 - 12269362
Alignment:
Q  85 tatgtataaatatacattacagagcatcaagctctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||||||||||| |||||||||||||||||||| ||| |||| ||   || |   |||||||||||||||||| ||||||||    
T  12269285 tatgtataaatgtacattacagagcatcaagccctcacccaacttaaataa---gtatgcaatggactcaacatcttaaca 12269362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 21618272 - 21618326
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | |||||||||||    
T  21618272 catcaagcccccaacgtatttgagcgtaaataggctcccagggcatcaagccctc 21618326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 22110530 - 22110453
Alignment:
Q  146 atggactcaacttcttaacattttagaa-catcgacttcttaatgcaaatccaataaattggaacatcatccttcatct 223  Q
    |||||||||||  |||||||| |||||| || |||| ||||| |  ||||||||||| |||||||||||||||||||||    
T  22110530 atggactcaacaacttaacatcttagaaacaacgacctctta-tataaatccaataatttggaacatcatccttcatct 22110453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 24153502 - 24153448
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | |||||||||||    
T  24153502 catcaagcccccaacgtatttgagcgtaaataggctcccagggcatcaagccctc 24153448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 36166378 - 36166432
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | |||||||||||    
T  36166378 catcaagcccccaacgtatttgagcgtaaataggctcccagggcatcaagccctc 36166432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 5214820 - 5214873
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| | |||||| ||||||||||||| ||| | |||||||||||    
T  5214820 catcaagcccccaacatattgaacgtaaataggctcacagggcatcaagccctc 5214873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 22307752 - 22307699
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| ||||||||||||||||| | || ||| | |||||||||||    
T  22307752 catcaagcccccaacgtattgagcgtaaatatgttcacagggcatcaagccctc 22307699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 6190274 - 6190474
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  6190274 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagcatcaagccctctaccatcgtgtattatgtataaatatacattacagagcatcaa 6190373  T
Q  115 gctctctcccatctcgtattatgcgtatgcaatggactcaacttcttaacattttagaacatcgacttcttaatgcaaatccaataaattggaacatcat 214  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6190374 gctctctaccatctcgtattatgcgtatgcaatggactcaactccttaacattttagaacatcgacttcttaatacaaatccaataaattggaacatcat 6190473  T
Q  215 c 215  Q
    |    
T  6190474 c 6190474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 55 - 223
Target Start/End: Complemental strand, 21815898 - 21815730
Alignment:
Q  55 cagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctcccatctcgtattatgcgtatgcaatggactca 154  Q
    ||||| ||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21815898 cagagcatcaagctctctcccatctcgtgttatgtataaatatacattacagagcatcaagctctctcccatctcgtattatgcgtatgtaatggactca 21815799  T
Q  155 acttcttaacattttagaacatcgacttcttaatgcaaatccaataaattggaacatcatccttcatct 223  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21815798 acttcttaacattttagaacatcgacttcttaatacaaatccaataaattggaacatcatccttcatct 21815730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 3514829 - 3514960
Alignment:
Q  34 tattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctcccatctcgtat 133  Q
    |||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  3514829 tattgagcgtaaataggctctcagtgcatcaagccctctcccatctcgtattatgtataaatatacattacagatcatcaagccctctcccatctcgtat 3514928  T
Q  134 tatgcgtatgcaatggactcaacttcttaaca 165  Q
    |||| |||||||||||||||||| ||||||||    
T  3514929 tatgagtatgcaatggactcaacatcttaaca 3514960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 21815987 - 21815865
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  21815987 ggacatcaagcccccatcgtattgagcgtaaataggctctcatagcatcaagccctctcccatcgtgtgttatgtataaatatacattacagagcatcaa 21815888  T
Q  115 gctctctcccatctcgtattatg 137  Q
    ||||||||||||||||| |||||    
T  21815887 gctctctcccatctcgtgttatg 21815865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 34 - 165
Target Start/End: Complemental strand, 15869214 - 15869083
Alignment:
Q  34 tattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctcccatctcgtat 133  Q
    ||||||||||||||||||||| | || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |||||    
T  15869214 tattgagcgtaaataggctcttatagcatcaagccctctcccatctcgtattatgtataaatatacattacagagcatcaagccctcccccatcacgtat 15869115  T
Q  134 tatgcgtatgcaatggactcaacttcttaaca 165  Q
    |||| |||||||||||||||||| || |||||    
T  15869114 tatgagtatgcaatggactcaacatcctaaca 15869083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 32850999 - 32851130
Alignment:
Q  34 tattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctcccatctcgtat 133  Q
    |||||||||||||||||||| ||||| |||||||||||||||||| |  ||| |||||||||||||||||||||||||||||| ||| |||||||| |||    
T  32850999 tattgagcgtaaataggctcccagagcatcaagccctctcccatctcagattgtgtataaatatacattacagagcatcaagccctcccccatctcatat 32851098  T
Q  134 tatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||||  ||||||||||||||||| || |||||    
T  32851099 tatgaatatgcaatggactcaacatcctaaca 32851130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 13844243 - 13844387
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    ||||||||||||| |||||||||| ||||||||||| ||||| |||||| |||||||| || | |||||||||||||||||||||||||||||||||||     
T  13844243 catcaagcccccaacgtattgagcttaaataggctcacagagcatcaagtcctctcccttcacatattatgtataaatatacattacagagcatcaagcc 13844342  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| ||||   ||||  ||| |||||||||||||||||| ||||||||    
T  13844343 ctcaccca--acgta-aatgagtatgcaatggactcaacatcttaaca 13844387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 19857222 - 19857329
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    ||||||||||||| | |||||||||||||||||||| ||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||||     
T  19857222 catcaagcccccaacatattgagcgtaaataggctcacagagcatcaagccctctcccttcacatattatgtataaatatacattacagagcatcaagcc 19857321  T
Q  118 ctctccca 125  Q
    ||| ||||    
T  19857322 ctcaccca 19857329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 15098989 - 15099133
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    ||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||| ||| || | |||||||||||||||||||||||||||||||||||     
T  15098989 catcaagcccccaacgtattgagcgtaaataggctcacagagcatcaaaccctcccccttcacatattatgtataaatatacattacagagcatcaagcc 15099088  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| ||||   ||||  ||| |||||||||||||||||| | ||||||    
T  15099089 ctcaccca--acgta-aatgagtatgcaatggactcaacattttaaca 15099133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 361895 - 362039
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    ||||||||||||| | ||||||| |||||||||||| ||||| ||||||| ||||||| || | |||||||||||||||||||||||||||||||||||     
T  361895 catcaagcccccaacatattgagtgtaaataggctcacagagcatcaagctctctcccttcacatattatgtataaatatacattacagagcatcaagcc 361994  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| ||||   ||||  ||| |||||||||||||||||  ||||||||    
T  361995 ctcaccca--acgta-aatgagtatgcaatggactcaatatcttaaca 362039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 44102076 - 44102130
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||| |||||||||||||||||||| | |||||||||||    
T  44102076 catcaagcccccaacgtatttgagcgtaaataggctctcagggcatcaagccctc 44102130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 10357631 - 10357578
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | ||||| |||||    
T  10357631 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaaaccctc 10357578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 35812587 - 35812534
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||  | |||||||||||    
T  35812587 catcaagcccccaacgtattgagcgtaaataggctcacatggcatcaagccctc 35812534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 18215655 - 18215602
Alignment:
Q  18 catcaagcccccatcgta-ttgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||||||||||| |||||||||||||||||| ||| | |||||||||||    
T  18215655 catcaagcccccatcgtatttgagcgtaaataggctc-cagggcatcaagccctc 18215602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 52312292 - 52312346
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||| ||||| |||||| |||||||||||||||| ||||| |||||||||||    
T  52312292 catcaagtccccaacgtatttgagcgtaaataggctcccagagcatcaagccctc 52312346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 10357547 - 10357494
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||| || |||||||||||||||||||||| ||| | ||||| |||||    
T  10357547 catcaagccctcaacgtattgagcgtaaataggctcacagggcatcaaaccctc 10357494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 19609182 - 19609235
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||| ||| |||||||||||||||||  ||| ||||| |||||||||||    
T  19609182 catcaagcctccaacgtattgagcgtaaataaactcacagagcatcaagccctc 19609235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 46642598 - 46642627
Alignment:
Q  85 tatgtataaatatacattacagagcatcaa 114  Q
    ||||||||||||||||||||||||||||||    
T  46642598 tatgtataaatatacattacagagcatcaa 46642627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 52192 - 51984
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  52192 ggacatcaatcccccatcgtattgagcgtaaataggctctcagagcatcaagccctctaccatcgcgtgttatgtataaatatacattacagagcatcaa 52093  T
Q  115 gctctctcccatctcgtattatgcgtatgcaatggactcaacttcttaacattttagaacatcgacttcttaatgcaaatccaataaattggaacatcat 214  Q
    ||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52092 gctatctaccatctcgtattatgcgtatgcaatggactcaactccttaacattttagaacatcgacttcttaatacaaatccaataaattggaacatcat 51993  T
Q  215 ccttcatct 223  Q
    |||| ||||    
T  51992 cctttatct 51984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 18456517 - 18456736
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18456517 ggacatcaagcccccatcgtattgagcgtaaataggctctcagaggatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 18456616  T
Q  115 gctctc-----------tcccatctcgtattatgcgtatgcaatggactcaacttcttaacattttagaacatcgacttcttaatgcaaatccaataaat 203  Q
    ||||||           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  18456617 gctctctcccatctcgttcccatctcgtattatgcgtatgcaatggactcaacttcctaacattttagaacatcgacttcttaatacaaatccaataaat 18456716  T
Q  204 tggaacatcatccttcatct 223  Q
    ||||||||||||||||||||    
T  18456717 tggaacatcatccttcatct 18456736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 18461677 - 18461896
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18461677 ggacatcaagcccccatcgtattgagcgtaaataggctctcagaggatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 18461776  T
Q  115 gctctc-----------tcccatctcgtattatgcgtatgcaatggactcaacttcttaacattttagaacatcgacttcttaatgcaaatccaataaat 203  Q
    ||||||           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  18461777 gctctctcccatctcgttcccatctcgtattatgcgtatgcaatggactcaacttcctaacattttagaacatcgacttcttaatacaaatccaataaat 18461876  T
Q  204 tggaacatcatccttcatct 223  Q
    ||||||||||||||||||||    
T  18461877 tggaacatcatccttcatct 18461896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 18822108 - 18821945
Alignment:
Q  61 atcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctcccatctcgtattatgcgtatgcaatggactcaacttct 160  Q
    ||||||| |||| ||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18822108 atcaagctctctaccatcacatattatgtataaatatacattacagagcatcaagctctctaccatctcgtattatgcgtatgcaatggactcaacttct 18822009  T
Q  161 taacattttagaacatcgac-ttcttaatgcaaatccaataaattggaacatcatccttcatct 223  Q
     ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  18822008 caacattttagaacatcgactttcttaatacaaatccaataaattggaacatcatccttcatct 18821945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 18822203 - 18822081
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  18822203 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagcatcaagccctctaccatcgcgtattatgtataaatatacattacaaagcatcaa 18822104  T
Q  115 gctctctcccatctcgtattatg 137  Q
    ||||||| ||||| | |||||||    
T  18822103 gctctctaccatcacatattatg 18822081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 25957102 - 25956958
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    ||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||||     
T  25957102 catcaagcccccaacgtattgagcgtaaataggctcacagagcatcaagccctctcccttcacatattatgtataaatatacattacagagcatcaagcc 25957003  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| ||||   ||||  ||| |||||||||||||||||| ||||||||    
T  25957002 ctcaccca--acgta-aatgagtatgcaatggactcaacatcttaaca 25956958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 18319535 - 18319620
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacatta 103  Q
    |||||||||| || | ||||||||||||||||||||  |||| ||||||||||||||| | |||||||||||||||||||||||||    
T  18319535 catcaagccctcaacatattgagcgtaaataggctccaagagcatcaagccctctccctttgcgtattatgtataaatatacatta 18319620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 27850833 - 27850924
Alignment:
Q  34 tattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctccca 125  Q
    ||||||||||||||||||||  |||| ||||||||||||||| || |||| |||||| |||||||||||| |||||||||||| ||| ||||    
T  27850833 tattgagcgtaaataggctcatagagcatcaagccctctcccctcacgtactatgtacaaatatacattatagagcatcaagccctcaccca 27850924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 17742991 - 17743044
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| ||||||||||||||||||||||  |||| |||||||||||    
T  17742991 catcaagcccccaacgtattgagcgtaaataggctcctagagcatcaagccctc 17743044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 23017308 - 23017252
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||||||||| |||||||||||||||||||||| ||| | ||||| |||||    
T  23017308 ggacatcaagcccccaacgtattgagcgtaaataggctcacagggcatcaaaccctc 23017252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 1595331 - 1595385
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||| |||||||||||||||||||| | |||||||||||    
T  1595331 catcaagcccccaacgtatttgagcgtaaataggctctcagggcatcaagccctc 1595385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 16133786 - 16133733
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| ||||||||| |||||||||||| ||| | |||||||||||    
T  16133786 catcaagcccccaacgtattgagagtaaataggctcacagggcatcaagccctc 16133733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 18708402 - 18708455
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||| || |||||||||||||||||||||| ||||| |||||| ||||    
T  18708402 catcaagccctcaacgtattgagcgtaaataggctcacagagcatcaagacctc 18708455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 19444396 - 19444343
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| ||||||||| |||||||||||| ||| | |||||||||||    
T  19444396 catcaagcccccaacgtattgagtgtaaataggctcacagggcatcaagccctc 19444343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 27573429 - 27573394
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctc 53  Q
    ||||||||||||| ||||||||||||||||||||||    
T  27573429 catcaagcccccaacgtattgagcgtaaataggctc 27573394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 31733650 - 31733685
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctc 53  Q
    ||||||||||||| ||||||||||||||||||||||    
T  31733650 catcaagcccccaacgtattgagcgtaaataggctc 31733685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 79637 - 79429
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  79637 ggacatcaagcccccatcttattgagcgtaaataggctctcagagcatcaagccctctaccatcgcgtattatgtataaatatacattacagagcatcaa 79538  T
Q  115 gctctctcccatctcgtattatgcgtatgcaatggactcaacttcttaacattttagaacatcgacttcttaatgcaaatccaataaattggaacatcat 214  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |||||||||||||||||||| ||    
T  79537 gctctctaccatcatgtattatgcgtatgcaatggactcaacttcttaacattttataacatcgacttcttattactaatccaataaattggaacattat 79438  T
Q  215 ccttcatct 223  Q
    |||||||||    
T  79437 ccttcatct 79429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 32452238 - 32452038
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||  | |||||||||||||||||||||||||||||||    
T  32452238 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagcatcaatccctctaccatcgttttttatgtataaatatacattacagagcatcaa 32452139  T
Q  115 gctctctcccatctcgtattatgcgtatgcaatggactcaacttcttaacattttagaacatcgacttcttaatgcaaatccaataaattggaacatcat 214  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32452138 gctctctaccatctcgtattatgcgtatgcaatggactcaactccttaacattttagaacatcgacttcttaatacaaatccaataaattggaacatcat 32452039  T
Q  215 c 215  Q
    |    
T  32452038 c 32452038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 9974827 - 9974880
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  9974827 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagccctc 9974880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 19202354 - 19202301
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  19202354 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagccctc 19202301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 22689582 - 22689635
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  22689582 catcaagcccccaacgtattgagcgtaaataggctcacagggaatcaagccctc 22689635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 22694178 - 22694231
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  22694178 catcaagcccccaacgtattgagcgtaaataggctcacagggaatcaagccctc 22694231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 24435955 - 24436008
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  24435955 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagccctc 24436008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 5032513 - 5032461
Alignment:
Q  19 atcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  5032513 atcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagccctc 5032461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 6478400 - 6478347
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | ||||| |||||    
T  6478400 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaaaccctc 6478347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 24782013 - 24781960
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||| || |||||||||||||||||||||| ||| | |||||||||||    
T  24782013 catcaagccctcaacgtattgagcgtaaataggctcacagggcatcaagccctc 24781960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 356940 - 357032
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagc 116  Q
    |||||||||| || |||||||||| ||||||||||| ||| | |||||||||||        | || |||||||||||||||||||||| |||||||||    
T  356940 catcaagccctcaacgtattgagcataaataggctcacagggcatcaagccctc------aacataatatgtataaatatacattacagggcatcaagc 357032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 6576142 - 6576189
Alignment:
Q  22 aagcccccatcgtattgagcgtaaataggctctcagagtatcaagccc 69  Q
    ||||||||| |||||||||||||||||||||| ||| | |||||||||    
T  6576142 aagcccccaacgtattgagcgtaaataggctcccagggcatcaagccc 6576189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 23712393 - 23712339
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | |||||||||||    
T  23712393 catcaagcccccaacgtatttgagcgtaaataggctcccagggcatcaagccctc 23712339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 21316863 - 21316810
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| ||||| |||| ||||||||||| ||| | |||||||||||    
T  21316863 catcaagcccccaacgtatagagcataaataggctcacagggcatcaagccctc 21316810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 22413315 - 22413239
Alignment:
Q  146 atggactcaacttcttaacattttagaacatcgacttcttaatgcaaatccaataaattggaacatcatccttcatct 223  Q
    |||||||||||  |||||||| ||| ||||| ||| ||||| |  ||||||||||| ||||||||||||| |||||||    
T  22413315 atggactcaacaacttaacatcttaaaacattgacctctta-tataaatccaataatttggaacatcatctttcatct 22413239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 23969698 - 23969645
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||| || |||||||||||||||||||||| ||| | ||||| |||||    
T  23969698 catcaagccctcaacgtattgagcgtaaataggctcacagggcatcaaaccctc 23969645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 24782055 - 24782002
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||| ||||||||||||| ||  | |||||||||||    
T  24782055 catcaagcccccaacgtattgaacgtaaataggctcacatggcatcaagccctc 24782002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 24883364 - 24883417
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||| || ||||||||| |||||||||||| ||| | |||||||||||    
T  24883364 catcaagccctcaacgtattgagtgtaaataggctcacagtgcatcaagccctc 24883417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 7672518 - 7672482
Alignment:
Q  80 cgtattatgtataaatatacattacagagcatcaagc 116  Q
    |||| |||||||||||||||||||||| |||||||||    
T  7672518 cgtaatatgtataaatatacattacagggcatcaagc 7672482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 19801716 - 19801526
Alignment:
Q  33 gtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctcccatctcgta 132  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||    
T  19801716 gtattgagcgtaaataggctctcagagcatcaagccctctaccatcgcgtattatgtataaagatacaatacagagcatcaagctctctaccatctcgta 19801617  T
Q  133 ttatgcgtatgcaatggactcaacttcttaacattttagaacatcgacttcttaatgcaaatccaataaattggaacatcatccttcatct 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||| |||||||||||||||||||||    
T  19801616 ttatgcgtatgcaatggactcaacttcttaacattttagaacatcgacttcttaacacaaatcaaataagttggaacatcatccttcatct 19801526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 38550472 - 38550328
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    ||||||||||||| | |||||||||||||||||||| ||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||||     
T  38550472 catcaagcccccaacatattgagcgtaaataggctcacagagcatcaagccctctcccttcacatattatgtataaatatacattacagagcatcaagcc 38550373  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| ||||   ||||  ||  |||||||||||||||||| ||||||||    
T  38550372 ctcaccca--acgta-aataagtatgcaatggactcaacatcttaaca 38550328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 39833623 - 39833769
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    |||||||||||||| | |||||||||||||||||||||| ||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||    
T  39833623 ggacatcaagccccaa-cgtattgagcgtaaataggctcacagagcatcaagccctctcccttctcatattatgtataaatatacattacagagcatcaa 39833721  T
Q  115 gctctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||  || ||||   ||||  ||| |||||||||||||||||| ||||||||    
T  39833722 gccatcaccca--acgta-aatgagtatgcaatggactcaacatcttaaca 39833769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 20983106 - 20982962
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    |||||| |||||| | |||||||||||||||||||| ||||  ||||| ||||||||| || | ||||||||||||||||||||||||||||||||||||    
T  20983106 catcaaacccccaacatattgagcgtaaataggctcacagaacatcaacccctctcccttcacatattatgtataaatatacattacagagcatcaagct 20983007  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
     || ||||   ||||  ||| |||||||||||||||||| ||||||||    
T  20983006 ttcaccca--acgta-aatgagtatgcaatggactcaacatcttaaca 20982962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 27472769 - 27472625
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    ||||||||||||| | ||||||| |||||||||||| ||||| ||||||||||||||| || | ||||||||||||||||| |||||||||||||||||     
T  27472769 catcaagcccccaacatattgagtgtaaataggctcacagagcatcaagccctctcccttcacatattatgtataaatatatattacagagcatcaagcc 27472670  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| ||||   ||||  ||| ||||||||| |||||||| ||||||||    
T  27472669 ctcaccca--acgta-aatgagtatgcaatagactcaacatcttaaca 27472625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 13428523 - 13428427
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    ||||||||||||| | |||||||||||||||||||| ||||| |||||| ||| |||| || | |||||||||||||||||||||||||||||||||    
T  13428523 catcaagcccccaacatattgagcgtaaataggctcacagagcatcaagtcctttcccttcacatattatgtataaatatacattacagagcatcaa 13428427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 1323558 - 1323458
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctc--ccatcgcgtattatgtataaatatacattacagagcatcaag 115  Q
    ||||||||||||| | ||||||||||||||| |||| ||||  |||||||||||||  || || | ||||||||||||||||||||||||||||||||||    
T  1323558 catcaagcccccaacatattgagcgtaaataagctcacagatcatcaagccctctctcccttcacatattatgtataaatatacattacagagcatcaag 1323459  T
Q  116 c 116  Q
    |    
T  1323458 c 1323458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 19801775 - 19801719
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  19801775 ggacatcaagcccccatcgtattgagcgtaaataggctctcagaacatcaagccctc 19801719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 24713123 - 24713176
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| |||||||||||||    
T  24713123 catcaagcccccaacgtattgagcgtaaataggctcacagggtatcaagccctc 24713176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 39937160 - 39937107
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  39937160 catcaagcccccaacgtattgagcgtaaataggctcgcagggcatcaagccctc 39937107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 18833230 - 18833283
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| | |||||||||||||||||||| ||| | |||||||||||    
T  18833230 catcaagcccccaacatattgagcgtaaataggctcccagggcatcaagccctc 18833283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 19127893 - 19127946
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||  |||||||||||||||||||||| ||  |||||||||||||    
T  19127893 catcaagcccccgacgtattgagcgtaaataggctcacatggtatcaagccctc 19127946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 116
Target Start/End: Original strand, 24713207 - 24713238
Alignment:
Q  85 tatgtataaatatacattacagagcatcaagc 116  Q
    ||||||||||||||||||||||||||||||||    
T  24713207 tatgtataaatatacattacagagcatcaagc 24713238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 15203611 - 15203557
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | |||||||||||    
T  15203611 catcaagcccccaacgtatttgagcgtaaataggctcccagggcatcaagccctc 15203557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 19127936 - 19128027
Alignment:
Q  19 atcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagc 116  Q
    ||||||||| || ||||||||||||||||||| || ||| | |||||||||||        | || |||||||||||||||||||||| |||||||||    
T  19127936 atcaagccctcaacgtattgagcgtaaataggatcacagggcatcaagccctc------aacataatatgtataaatatacattacagggcatcaagc 19128027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 26225629 - 26225575
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | |||||||||||    
T  26225629 catcaagcccccaacgtatttgagcgtaaataggctcccagggcatcaagccctc 26225575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 45291076 - 45291022
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | |||||||||||    
T  45291076 catcaagcccccaacgtatttgagcgtaaataggctcccagggcatcaagccctc 45291022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 18760332 - 18760373
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagag 59  Q
    |||||||||||||  ||||||||||||||||||||| |||||    
T  18760332 catcaagcccccaatgtattgagcgtaaataggctcacagag 18760373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 12756978 - 12756816
Alignment:
Q  61 atcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctcccatctcgtattatgcgtatgcaatggactcaacttct 160  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12756978 atcaagccctctcccatcgcgtattatgtataaatatacaatacagagcatcaagctctctcccatctcgtattatgcgtatgcaatggactcaacttct 12756879  T
Q  161 taacattttagaacatcgacttcttaatgcaaatccaataaattggaacatcatccttcatct 223  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12756878 tagcattttagaacatcgacttcttaatacaaatccaataaattggaacatcatccttcatct 12756816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 37728018 - 37727874
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    ||||||||||||| ||||||||||||||||||||||  |||| ||||| ||||||||| || | ||||||||||||||||||||||||||||||||||||    
T  37728018 catcaagcccccaacgtattgagcgtaaataggctcaaagagcatcaaaccctctcccttcacatattatgtataaatatacattacagagcatcaagct 37727919  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| ||||   ||||  ||| |||||||||||||||||| ||||||||    
T  37727918 ctcaccca--acgta-aatgagtatgcaatggactcaacatcttaaca 37727874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 9390177 - 9390033
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    ||||||||||||| | |||||||||||||||||||| ||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||||     
T  9390177 catcaagcccccaacatattgagcgtaaataggctcacagagcatcaagccctctcccttcacatattatgtataaatatacattacagagcatcaagcc 9390078  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| ||||   ||||  ||| |||||||||||||||||  ||||||||    
T  9390077 ctcaccca--acgta-aatgagtatgcaatggactcaatatcttaaca 9390033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 17232269 - 17232413
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    ||||||||||||| | |||||||||||||||||||| ||||| ||||||||||||||| || | |||||||||||||||||||||||| ||||||||||     
T  17232269 catcaagcccccaacatattgagcgtaaataggctcacagagcatcaagccctctcccttcacatattatgtataaatatacattacatagcatcaagcc 17232368  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| ||||   ||||  ||| |||||||||||||||||| ||||||||    
T  17232369 ctcaccca--acgta-aatgagtatgcaatggactcaacatcttaaca 17232413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 6170586 - 6170439
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    |||||||||| ||||| ||||||||||||||||||||||  |||| ||||||||||||||| || | |||||||||||||||||||||| ||||||||||    
T  6170586 ggacatcaagtccccaacgtattgagcgtaaataggctcatagagcatcaagccctctcccttcacatattatgtataaatatacattatagagcatcaa 6170487  T
Q  115 gctctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    || ||| ||||   ||||  ||| |||||||||||||||||| ||||||||    
T  6170486 gccctcaccca--acgta-aatgagtatgcaatggactcaacatcttaaca 6170439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 45848102 - 45847960
Alignment:
Q  20 tcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctct 119  Q
    ||||||||||| | |||||||||||||||||||| ||||| |||||||||||  || || | ||||||||||||||||||||||||||||||||||| ||    
T  45848102 tcaagcccccaacatattgagcgtaaataggctcacagagcatcaagccctcaaccttcacatattatgtataaatatacattacagagcatcaagccct 45848003  T
Q  120 ctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    | ||||   ||||  ||| |||||||||||||||| | ||||||||    
T  45848002 caccca--acgta-aatgagtatgcaatggactcagcatcttaaca 45847960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 14270515 - 14270435
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatata 98  Q
    ||||||||||||| | |||||||||||||||||||| ||||| ||||||||||||||| || | |||||||||||||||||    
T  14270515 catcaagcccccaacatattgagcgtaaataggctcacagagcatcaagccctctcccttcacatattatgtataaatata 14270435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 1543530 - 1543467
Alignment:
Q  34 tattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatat 97  Q
    ||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||||||||||    
T  1543530 tattgagcgtaaataggctcctagagcatcaagccctctcccatctcgtattatgtataaatat 1543467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 8468133 - 8468191
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctccca 76  Q
    ||||||||||||| | |||||||||||||||||||| ||||| ||||||||||| ||||    
T  8468133 catcaagcccccaacatattgagcgtaaataggctcacagagcatcaagccctcaccca 8468191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 8852315 - 8852262
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  8852315 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagccctc 8852262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 38227286 - 38227339
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  38227286 catcaagcccccaacgtattgagcgtaaataggctcccagggcatcaagccctc 38227339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 11066328 - 11066380
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccct 70  Q
    ||||||||||||| |||||||||||||||||||||| ||| | ||||||||||    
T  11066328 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagccct 11066380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 32300904 - 32300956
Alignment:
Q  19 atcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  32300904 atcaagcccccaacgtattgagcgtaaataggctcccagggcatcaagccctc 32300956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 12371204 - 12371257
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||| ||||||||||| ||| | |||||||||||    
T  12371204 catcaagcccccaacgtattgagcataaataggctcacagggcatcaagccctc 12371257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 12371246 - 12371299
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||| || |||||||||||||||||||||| ||| | |||||||||||    
T  12371246 catcaagccctcaacgtattgagcgtaaataggctcacagggcatcaagccctc 12371299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 13150728 - 13150675
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||| ||| |||||||||||||||||||||| ||| | |||||||||||    
T  13150728 catcaagcctccaacgtattgagcgtaaataggctcacagggcatcaagccctc 13150675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 20619145 - 20619198
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| ||||||||||||||||||||||  || | |||||||||||    
T  20619145 catcaagcccccaacgtattgagcgtaaataggctcatagggcatcaagccctc 20619198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 20619187 - 20619240
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||| || |||||||||||||||||||||| ||| | |||||||||||    
T  20619187 catcaagccctcaacgtattgagcgtaaataggctcacagggcatcaagccctc 20619240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 44116333 - 44116387
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | |||||||||||    
T  44116333 catcaagcccccaacgtatttgagcgtaaataggctcccagggcatcaagccctc 44116387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 48273172 - 48273226
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | |||||||||||    
T  48273172 catcaagcccccaacgtatttgagcgtaaataggctcccagggcatcaagccctc 48273226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 61569 - 61516
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| ||||||||||||||||| ||||  || | |||||||||||    
T  61569 catcaagcccccaacgtattgagcgtaaatatgctcatagggcatcaagccctc 61516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 13150686 - 13150633
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||| || |||||||||||||||||||||| ||  | |||||||||||    
T  13150686 catcaagccctcaacgtattgagcgtaaataggctcacatggcatcaagccctc 13150633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 14183774 - 14183721
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| | |||||||| ||||||| ||| ||| |||||||||||||    
T  14183774 catcaagcccccaacatattgagcataaatagactcacagggtatcaagccctc 14183721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 18075627 - 18075582
Alignment:
Q  26 ccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||| |||||||||||||||||||||| ||| | |||||||||||    
T  18075627 ccccaacgtattgagcgtaaataggctcacagggcatcaagccctc 18075582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 18875999 - 18875946
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||| |||||| |||||||| ||||||||||||| ||| | |||||||||||    
T  18875999 catcaaacccccaacgtattgaccgtaaataggctcacagggcatcaagccctc 18875946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 20110336 - 20110389
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccct 70  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | ||||||||||    
T  20110336 catcaagcccccaacgtatttgagcgtaaataggctcccagggcatcaagccct 20110389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 36686350 - 36686297
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||| || |||||||||||||||||||||| ||| | ||||| |||||    
T  36686350 catcaagccctcaacgtattgagcgtaaataggctcacagggcatcaaaccctc 36686297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 48811739 - 48811792
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||| || |||||||||||||||||||||| ||| | ||||| |||||    
T  48811739 catcaagccctcaacgtattgagcgtaaataggctcacagggcatcaaaccctc 48811792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 1543508 - 1543476
Alignment:
Q  105 agagcatcaagctctctcccatctcgtattatg 137  Q
    |||||||||||| ||||||||||||||||||||    
T  1543508 agagcatcaagccctctcccatctcgtattatg 1543476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 55 - 223
Target Start/End: Complemental strand, 20691 - 20523
Alignment:
Q  55 cagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctcccatctcgtattatgcgtatgcaatggactca 154  Q
    ||||| ||||| | |||| |||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20691 cagagcatcaacctctctgccatcgtgtattatgtataaatatacattatagagcatcaagctctctaccatctcgtattatgcgtatgcaatggactca 20592  T
Q  155 acttcttaacattttagaacatcgacttcttaatgcaaatccaataaattggaacatcatccttcatct 223  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  20591 acttcttaacattttagaacatcgacttcttaatacaaatccaataagttggaacatcatccttcatct 20523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 20780 - 20658
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20780 ggacatcaagcccccatcgtattgagcgtaaataggctcttagagcatcaagccctctaccatcgcgtattatgtataaatatacattacagagcatcaa 20681  T
Q  115 gctctctcccatctcgtattatg 137  Q
     |||||| |||||  ||||||||    
T  20680 cctctctgccatcgtgtattatg 20658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0716 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 4516 - 4647
Alignment:
Q  34 tattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctcccatctcgtat 133  Q
    |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4516 tattgagcgtaaataggctctcagagcattaagccctctcccatctcgtattatgtataaatatacattacagagcatcaagccctctcccatctcgtat 4615  T
Q  134 tatgcgtatgcaatggactcaacttcttaaca 165  Q
    |||| |||||||||||||||||| ||||||||    
T  4616 tatgagtatgcaatggactcaacatcttaaca 4647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 165
Target Start/End: Complemental strand, 8800 - 8669
Alignment:
Q  34 tattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctcccatctcgtat 133  Q
    |||||||||||||||||||| ||||| ||||||| |||||||||| | |||| |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  8800 tattgagcgtaaataggctcccagagcatcaagctctctcccatctcatattgtgtataaatatacattacagagcatcaagccctcccccatctcgtat 8701  T
Q  134 tatgcgtatgcaatggactcaacttcttaaca 165  Q
    |||| |||||||||||||||||| || |||||    
T  8700 tatgagtatgcaatggactcaacatcctaaca 8669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 52304 - 52250
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | |||||||||||    
T  52304 catcaagcccccaacgtatttgagcgtaaataggctcccagggcatcaagccctc 52250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 34 - 136
Target Start/End: Original strand, 9701 - 9803
Alignment:
Q  34 tattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctcccatctcgtat 133  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||| |||||    
T  9701 tattgagcgtaaataggctctcagagcatcaagccctctcccatctcgtattatgtataaatattcattacagagcatcaagccctctcccatcacgtat 9800  T
Q  134 tat 136  Q
    |||    
T  9801 tat 9803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 9722 - 9755
Alignment:
Q  104 cagagcatcaagctctctcccatctcgtattatg 137  Q
    ||||||||||||| ||||||||||||||||||||    
T  9722 cagagcatcaagccctctcccatctcgtattatg 9755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 43542758 - 43542902
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    ||||||||||||| ||||||||||||||||||| || ||||| ||||||||||||||| || | ||||||||||||||||||||||||||||||||||||    
T  43542758 catcaagcccccaacgtattgagcgtaaatagggtcacagagcatcaagccctctcccttcacatattatgtataaatatacattacagagcatcaagct 43542857  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| ||||   ||||  ||| |||||||||||||||||| ||||||||    
T  43542858 ctcaccca--acgta-aatgagtatgcaatggactcaacatcttaaca 43542902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 28194933 - 28194786
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    |||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||    
T  28194933 ggacatcaagcccccaacgtattgagcgtaaataggctcacagagcatcaagccctctcccttcacatattatgtataaatatacattacagagcatcaa 28194834  T
Q  115 gctctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    || ||| ||||   ||||  ||| |||||||||||||||||| ||| ||||    
T  28194833 gccctcaccca--acgta-aatgagtatgcaatggactcaacatctaaaca 28194786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 41306068 - 41305924
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    ||||||||||||| | |||||||||||||||||||| ||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||||     
T  41306068 catcaagcccccaacatattgagcgtaaataggctcacagagcatcaagccctctcccttcacatattatgtataaatatacattacagagcatcaagcc 41305969  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| ||||   ||||  ||| |||||||||||||||||| ||||||||    
T  41305968 ctcaccca--acgta-aatgagtatgcaatggactcaacatcttaaca 41305924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 20636542 - 20636688
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    |||||||||||||||| |||||||||| ||||||||||| ||||| ||||||||||||||| || | ||||||| |||||||||||||||||||||||||    
T  20636542 ggacatcaagcccccaacgtattgagcataaataggctcacagagcatcaagccctctcccttcacatattatggataaatatacattacagagcatcaa 20636641  T
Q  115 gctctctcccatctcgtattatgcgtatgcaatggactcaacttcttaac 164  Q
    || ||| ||||   ||||  ||| |||||||||||||||||| |||||||    
T  20636642 gccctcaccca--acgta-aatgagtatgcaatggactcaacatcttaac 20636688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 35982160 - 35982016
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    ||||||||||||| | |||||||||||||||||||| ||||| ||||||||||||||| || | ||||||||||||||| |||||||||||||||||||     
T  35982160 catcaagcccccaacatattgagcgtaaataggctcacagagcatcaagccctctcccttcacatattatgtataaataaacattacagagcatcaagcc 35982061  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| ||||   ||||  ||| |||||||||||||||||| ||||||||    
T  35982060 ctcaccca--acgta-aatgagtatgcaatggactcaacatcttaaca 35982016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 43697015 - 43697110
Alignment:
Q  19 atcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    |||||||||||| |||||||||||||||||| |||  |||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||    
T  43697015 atcaagcccccaacgtattgagcgtaaatagactcatagagcatcaagccctctcccttcacatattatgtataaatatacattacagagcatcaa 43697110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 46383036 - 46382940
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    ||||||||||||| | |||||| ||||||||||||| ||||| ||||| ||||||||| || | |||||||||||||||||||||||||||||||||    
T  46383036 catcaagcccccaacatattgaacgtaaataggctcacagagcatcaaaccctctcccttcacatattatgtataaatatacattacagagcatcaa 46382940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 431541 - 431594
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  431541 catcaagcccccaacgtattgagcgtaaataggctcccagggcatcaagccctc 431594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 35088379 - 35088430
Alignment:
Q  20 tcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  35088379 tcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagccctc 35088430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 16368463 - 16368387
Alignment:
Q  146 atggactcaacttcttaacattttagaacatcgacttcttaatgcaaatccaataaattggaacatcatccttcatct 223  Q
    |||||||||||  |||| ||| ||||||||||||| ||||| |  ||||||||||| ||||||||||||| |||||||    
T  16368463 atggactcaacaacttagcatcttagaacatcgacctctta-tataaatccaataatttggaacatcatcattcatct 16368387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 41227843 - 41227790
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||  | |||||||||||    
T  41227843 catcaagcccccaacgtattgagcgtaaataggctcacatggcatcaagccctc 41227790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 50686555 - 50686631
Alignment:
Q  146 atggactcaacttcttaacattttagaacatcgacttcttaatgcaaatccaataaattggaacatcatccttcatct 223  Q
    |||||||||||  |||||||| ||||||||||||| |||| ||  ||||||||||| |||||||| |||| |||||||    
T  50686555 atggactcaacaacttaacatcttagaacatcgacctctt-atataaatccaataatttggaacaacatctttcatct 50686631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 20587632 - 20587684
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccct 70  Q
    |||||||||| || |||||||||||||||||||||| ||| | ||||||||||    
T  20587632 catcaagccctcaacgtattgagcgtaaataggctcacagggcatcaagccct 20587684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 20592170 - 20592222
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccct 70  Q
    |||||||||| || |||||||||||||||||||||| ||| | ||||||||||    
T  20592170 catcaagccctcaacgtattgagcgtaaataggctcacagggcatcaagccct 20592222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 116
Target Start/End: Original strand, 35088503 - 35088534
Alignment:
Q  85 tatgtataaatatacattacagagcatcaagc 116  Q
    ||||||||||||||||||||||||||||||||    
T  35088503 tatgtataaatatacattacagagcatcaagc 35088534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 48300765 - 48300800
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctc 53  Q
    ||||||||||||| ||||||||||||||||||||||    
T  48300765 catcaagcccccaacgtattgagcgtaaataggctc 48300800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 13528908 - 13528855
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| ||||||||||||||||||  || ||| | |||||||||||    
T  13528908 catcaagcccccaacgtattgagcgtaaatagaatcacagggcatcaagccctc 13528855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 20316210 - 20316263
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||| |||||| |||||||||||||||||||||| ||  | |||||||||||    
T  20316210 catcaaacccccaacgtattgagcgtaaataggctcccaaggcatcaagccctc 20316263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 20634720 - 20634671
Alignment:
Q  22 aagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||| |||||||||||||||||||||| |||   |||||||||||    
T  20634720 aagcccccaacgtattgagcgtaaataggctcacaggacatcaagccctc 20634671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 23967551 - 23967604
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||| ||||  ||||||||||||||||||||| ||| | |||||||||||    
T  23967551 catcaagctcccaaggtattgagcgtaaataggctcccagggcatcaagccctc 23967604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 40388972 - 40389029
Alignment:
Q  15 ggacatcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||||||||| |||| | |||||||||||||||| ||| | |||||||||||    
T  40388972 ggacatcaagcccccaacgtagtagagcgtaaataggctcccagggcatcaagccctc 40389029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 41050169 - 41050137
Alignment:
Q  191 aaatccaataaattggaacatcatccttcatct 223  Q
    ||||||||||| |||||||||||||||||||||    
T  41050169 aaatccaataatttggaacatcatccttcatct 41050137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 13180 - 13311
Alignment:
Q  34 tattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctcccatctcgtat 133  Q
    |||||||||||||||||||| ||||| |||||||||||||||||| |  ||| |||||||||||||||||||||||||||||| ||| |||||||| |||    
T  13180 tattgagcgtaaataggctcccagagcatcaagccctctcccatctcagattgtgtataaatatacattacagagcatcaagccctcccccatctcatat 13279  T
Q  134 tatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||||  ||||||||||||||||| || |||||    
T  13280 tatgaatatgcaatggactcaacatcctaaca 13311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 24882 - 25012
Alignment:
Q  34 tattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctcccatctcgtat 133  Q
    |||||||||||||||||||| ||||| |||||||||||||||||| |  ||| ||||| ||||||||||||||||||||||||  || ||||||||  ||    
T  24882 tattgagcgtaaataggctcccagagcatcaagccctctcccatctcagattgtgtat-aatatacattacagagcatcaagccgtcccccatctcagat 24980  T
Q  134 tatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||||  | ||||||||||||||| || |||||    
T  24981 tatgaatgtgcaatggactcaacatcctaaca 25012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 34767 - 34898
Alignment:
Q  34 tattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctcccatctcgtat 133  Q
    |||||||| ||||||||||| ||||| |||||||||||||||||| |  ||| |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  34767 tattgagcataaataggctcccagagcatcaagccctctcccatctcagattgtgtataaatatacattacagagcatcaagccctcccccatctcgtat 34866  T
Q  134 tatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||||  ||||||||||||||||| || |||||    
T  34867 tatgaatatgcaatggactcaacatcctaaca 34898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 5889643 - 5889496
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    |||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||  || | |||||||||||||||||||||||||||||||||    
T  5889643 ggacatcaagcccccaacgtattgagcgtaaataggctcacagagcatcaagccctctcctttcacatattatgtataaatatacattacagagcatcaa 5889544  T
Q  115 gctctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    || ||| ||||   ||||  ||| |||||||||||||||||| ||||||||    
T  5889543 gccctcaccca--acgta-aatgagtatgcaatggactcaacatcttaaca 5889496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 170
Target Start/End: Complemental strand, 21742025 - 21741873
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaa 114  Q
    ||||||||||||| || |||||||||||||||||||||| ||||| ||||| ||||||||  || | |||||||||||||||||||||||||||||||||    
T  21742025 ggacatcaagccctcaacgtattgagcgtaaataggctcacagagcatcaaaccctctcctttcacatattatgtataaatatacattacagagcatcaa 21741926  T
Q  115 gctctctcccatctcgtattatgcgtatgcaatggactcaacttcttaacatttta 170  Q
    || ||| ||||   ||||  ||| |||||||||||||||||| |||||||| ||||    
T  21741925 gccctcaccca--acgta-aatgagtatgcaatggactcaacatcttaacaattta 21741873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 29915500 - 29915436
Alignment:
Q  15 ggacatcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcg 79  Q
    |||||||||||||| | | |||||||||||||||||||| ||||| ||||||||||| |||||||    
T  29915500 ggacatcaagccccgaacttattgagcgtaaataggctcacagagcatcaagccctcgcccatcg 29915436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 21309116 - 21309063
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||| |||||| |||||||||||||||||||||| ||| | |||||||||||    
T  21309116 catcaaacccccaacgtattgagcgtaaataggctcacagggcatcaagccctc 21309063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 19920617 - 19920652
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctc 53  Q
    ||||||||||||| ||||||||||||||||||||||    
T  19920617 catcaagcccccaacgtattgagcgtaaataggctc 19920652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 14047903 - 14047957
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | |||||||||||    
T  14047903 catcaagcccccaacgtatttgagcgtaaataggctcccagggcatcaagccctc 14047957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 20918327 - 20918273
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | |||||||||||    
T  20918327 catcaagcccccaacgtatttgagcgtaaataggctcccagggcatcaagccctc 20918273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 32027175 - 32027229
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||| |||||||||||||||||||| | || ||||||||    
T  32027175 catcaagcccccaacgtatttgagcgtaaataggctctcagggcattaagccctc 32027229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 44265 - 44121
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    ||||||||||||| | |||||||||||||||||||| ||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||||     
T  44265 catcaagcccccaacatattgagcgtaaataggctcacagagcatcaagccctctcccttcacatattatgtataaatatacattacagagcatcaagcc 44166  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| ||||   ||||  ||| |||||||||||||||||| ||||||||    
T  44165 ctcaccca--acgta-aatgagtatgcaatggactcaacatcttaaca 44121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 2685 - 2792
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||     
T  2685 catcaagcccccaacgtattgagcgcaaataggctcacagagtatcaagccctctcccttcacatattatgtataaatatacattacagagcatcaagcc 2784  T
Q  118 ctctccca 125  Q
    ||| ||||    
T  2785 ctcaccca 2792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1792 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold1792
Description:

Target: scaffold1792; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 36 - 179
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    |||||||||| || | ||||||||||||||||||||  |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||     
T  36 catcaagccctcaacatattgagcgtaaataggctccaagagcatcaagccctctcccttcgcgtattatgtataaatatacattacagagcgtcaagc- 134  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| ||||   ||||  ||| |||||||||||||||||| ||||||||    
T  135 ctcaccca--acgta-aatgagtatgcaatggactcaacatcttaaca 179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 20934 - 20790
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    |||||||||| || | ||||||||||||||||||||  |||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||     
T  20934 catcaagccctcaacatattgagcgtaaataggctccaagagcatcaagccctctccctttgcgtattatgtataaatatacattatagagcatcaagcc 20835  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| ||||   ||||  ||| |||||||||||||||||| ||||||||    
T  20834 ctcaccca--acgta-aatgagtatgcaatggactcaacatcttaaca 20790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 23864 - 23721
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    |||||||||| || | ||||||||||||||||||||  |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||     
T  23864 catcaagccctcaacatattgagcgtaaataggctccaagagcatcaagccctctcccttcgcgtattatgtataaatatacattacagagcgtcaagc- 23766  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| ||||   ||||  ||| |||||||||||||||||| ||||||||    
T  23765 ctcaccca--acgta-aatgagtatgcaatggactcaacatcttaaca 23721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 74469 - 74600
Alignment:
Q  34 tattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctcccatctcgtat 133  Q
    |||||||| ||||||| ||| ||||  |||||||||||||||||| |  ||| |||||||||||||||||||||||||||| | ||| ||||||||||||    
T  74469 tattgagcataaatagactcccagaacatcaagccctctcccatctcagattgtgtataaatatacattacagagcatcaaaccctcccccatctcgtat 74568  T
Q  134 tatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||||  ||||||||||||||||| || |||||    
T  74569 tatgaatatgcaatggactcaacatcctaaca 74600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 106205 - 106349
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagct 117  Q
    ||||||||||||| | ||||||||||||||||||||  |||| ||||||| ||||||| || | ||||||||||||||||||||||||||||||||| ||    
T  106205 catcaagcccccaacatattgagcgtaaataggctcatagagcatcaagctctctcccttcacatattatgtataaatatacattacagagcatcaaact 106304  T
Q  118 ctctcccatctcgtattatgcgtatgcaatggactcaacttcttaaca 165  Q
    ||| ||  |  ||||  ||| |||||||||||||||||| ||||||||    
T  106305 ctcacc--taacgta-aatgagtatgcaatggactcaacatcttaaca 106349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 47140 - 47049
Alignment:
Q  34 tattgagcgtaaataggctctcagagtatcaagccctctcccatcgcgtattatgtataaatatacattacagagcatcaagctctctccca 125  Q
    |||||||||||||||||||| ||||  |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||| ||||    
T  47140 tattgagcgtaaataggctcacagaacatcaagccctctcccatcacatattatgtataaatatacattacagagcatcaagccctcaccca 47049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 57702 - 57755
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  57702 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagccctc 57755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 77988 - 78041
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  77988 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagccctc 78041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 78502 - 78449
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  78502 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagccctc 78449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 6838 - 6786
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccct 70  Q
    ||||||||||||| |||||||||||||||||||||| ||| | ||||||||||    
T  6838 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagccct 6786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 6754 - 6701
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||| || ||||||||||||||||||| || ||| | |||||||||||    
T  6754 catcaagccctcaacgtattgagcgtaaataggttcacagggcatcaagccctc 6701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 1931 - 1899
Alignment:
Q  191 aaatccaataaattggaacatcatccttcatct 223  Q
    ||||||||||| |||||||||||||||||||||    
T  1931 aaatccaataatttggaacatcatccttcatct 1899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 2989 - 2936
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| ||||||||||||||||||||||  || | |||||||||||    
T  2989 catcaagcccccaacgtattgagcgtaaataggctcatagggcatcaagccctc 2936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0507 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 3074 - 3025
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagc 67  Q
    ||||||||||||| |||||||||||||||||||||| ||| | |||||||    
T  3074 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaagc 3025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0375 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 9452 - 9399
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||| || |||||||||||||||||||||| ||| | |||||||||||    
T  9452 catcaagccctcaacgtattgagcgtaaataggctcacagggcatcaagccctc 9399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0375; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 9494 - 9441
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||  ||| | |||||||||||    
T  9494 catcaagcccccaacgtattgagcgtaaataggcttacagggcatcaagccctc 9441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 2785 - 2838
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| | |||||||||||||||||||| ||| | |||||||||||    
T  2785 catcaagcccccaacatattgagcgtaaataggctcacagggcatcaagccctc 2838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 751 - 698
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||| ||||||||||| ||| | |||||||||||    
T  751 catcaagcccccaacgtattgagcataaataggctcacagggcatcaagccctc 698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 41339 - 41286
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||||||||||||||||||| ||| | ||||| |||||    
T  41339 catcaagcccccaacgtattgagcgtaaataggctcacagggcatcaaaccctc 41286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 7216 - 7269
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||| || |||||||||||||||||||||| ||| | |||||||||||    
T  7216 catcaagcccacaacgtattgagcgtaaataggctcacagggcatcaagccctc 7269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 14335 - 14388
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||| || |||||||||||||||||||||| ||| | |||||||||||    
T  14335 catcaagcccacaacgtattgagcgtaaataggctcacagggcatcaagccctc 14388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 14400 - 14453
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||| || |||||| ||||||||||||||| ||| | |||||||||||    
T  14400 catcaagccctcaacgtattaagcgtaaataggctcacagggcatcaagccctc 14453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 13586 - 13638
Alignment:
Q  19 atcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||||| ||||||||||||||| |||||| ||| | |||||||||||    
T  13586 atcaagcccccaacgtattgagcgtaaaaaggctcacagggcatcaagccctc 13638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 60880 - 60817
Alignment:
Q  159 cttaacattttagaacatcgacttcttaatgcaaatccaataaattggaacatcatccttcatct 223  Q
    |||||||| ||||||||||||| ||||| |  ||||||||||| ||||||||||||| |||||||    
T  60880 cttaacatcttagaacatcgacctctta-tataaatccaataatttggaacatcatctttcatct 60817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1351
Description:

Target: scaffold1351; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 116
Target Start/End: Original strand, 1402 - 1433
Alignment:
Q  85 tatgtataaatatacattacagagcatcaagc 116  Q
    ||||||||||||||||||||||||||||||||    
T  1402 tatgtataaatatacattacagagcatcaagc 1433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0509 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0509
Description:

Target: scaffold0509; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 9950 - 9915
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctc 53  Q
    ||||||||||||| ||||||||||||||||||||||    
T  9950 catcaagcccccaacgtattgagcgtaaataggctc 9915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 116
Target Start/End: Original strand, 76737 - 76768
Alignment:
Q  85 tatgtataaatatacattacagagcatcaagc 116  Q
    ||||||||||||||||||||||||||||||||    
T  76737 tatgtataaatatacattacagagcatcaagc 76768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 10292 - 10258
Alignment:
Q  85 tatgtataaatatacattacagagcatcaagctct 119  Q
    |||||||||||||||||||||| ||||||||||||    
T  10292 tatgtataaatatacattacagggcatcaagctct 10258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 15532 - 15478
Alignment:
Q  18 catcaagcccccatcgtatt-gagcgtaaataggctctcagagtatcaagccctc 71  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | |||||||||||    
T  15532 catcaagcccccaacgtatttgagcgtaaataggctcccagggcatcaagccctc 15478  T

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Target: scaffold1633 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1633
Description:

Target: scaffold1633; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 156 - 209
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||| || |||||||||||||||||||||| ||| | ||||| |||||    
T  156 catcaagccctcaacgtattgagcgtaaataggctcacagggcatcaaaccctc 209  T

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Target: scaffold1403 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1403
Description:

Target: scaffold1403; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 494 - 570
Alignment:
Q  146 atggactcaacttcttaacattttagaacatcgacttcttaatgcaaatccaataaattggaacatcatccttcatct 223  Q
    |||||||||||  |||| ||| ||||||||||||| |||| ||  ||||||||||| ||||||||||||  |||||||    
T  494 atggactcaacaacttagcatcttagaacatcgacctctt-atataaatccaataatttggaacatcataattcatct 570  T

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Target: scaffold0080 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 59703 - 59650
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||| |||||| |||||||||||||||||||||| ||| | || ||||||||    
T  59703 catcaaacccccaacgtattgagcgtaaataggctcacagggcataaagccctc 59650  T

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Target: scaffold0061 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 19569 - 19516
Alignment:
Q  18 catcaagcccccatcgtattgagcgtaaataggctctcagagtatcaagccctc 71  Q
    |||||||||| || | |||||||||||||||||||| ||| | |||||||||||    
T  19569 catcaagccctcaacatattgagcgtaaataggctcacagggcatcaagccctc 19516  T

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